294 related articles for article (PubMed ID: 20378554)
21. SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads.
Hampton OA; English AC; Wang M; Salerno WJ; Liu Y; Muzny DM; Han Y; Wheeler DA; Worley KC; Lupski JR; Gibbs RA
BMC Genomics; 2017 Oct; 18(Suppl 6):691. PubMed ID: 28984202
[TBL] [Abstract][Full Text] [Related]
22. Challenges in studying genomic structural variant formation mechanisms: the short-read dilemma and beyond.
Onishi-Seebacher M; Korbel JO
Bioessays; 2011 Nov; 33(11):840-50. PubMed ID: 21959584
[TBL] [Abstract][Full Text] [Related]
23. Detection of structural variants involving repetitive regions in the reference genome.
Lee H; Popodi E; Foster PL; Tang H
J Comput Biol; 2014 Mar; 21(3):219-33. PubMed ID: 24552580
[TBL] [Abstract][Full Text] [Related]
24. An integrative probabilistic model for identification of structural variation in sequencing data.
Sindi SS; Onal S; Peng LC; Wu HT; Raphael BJ
Genome Biol; 2012; 13(3):R22. PubMed ID: 22452995
[TBL] [Abstract][Full Text] [Related]
25. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
[TBL] [Abstract][Full Text] [Related]
26. Characterization of structural variants with single molecule and hybrid sequencing approaches.
Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
[TBL] [Abstract][Full Text] [Related]
27. Detection and visualization of complex structural variants from long reads.
Stephens Z; Wang C; Iyer RK; Kocher JP
BMC Bioinformatics; 2018 Dec; 19(Suppl 20):508. PubMed ID: 30577744
[TBL] [Abstract][Full Text] [Related]
28. Application of second-generation sequencing to cancer genomics.
Robison K
Brief Bioinform; 2010 Sep; 11(5):524-34. PubMed ID: 20427421
[TBL] [Abstract][Full Text] [Related]
29. Multiple sequence assembly from reads alignable to a common reference genome.
Peng Q; Smith AD
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(5):1283-95. PubMed ID: 21778524
[TBL] [Abstract][Full Text] [Related]
30. NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads.
Khelik K; Sandve GK; Nederbragt AJ; Rognes T
BMC Bioinformatics; 2020 Feb; 21(1):66. PubMed ID: 32085722
[TBL] [Abstract][Full Text] [Related]
31. Illuminator, a desktop program for mutation detection using short-read clonal sequencing.
Carr IM; Morgan JE; Diggle CP; Sheridan E; Markham AF; Logan CV; Inglehearn CF; Taylor GR; Bonthron DT
Genomics; 2011 Oct; 98(4):302-9. PubMed ID: 21621601
[TBL] [Abstract][Full Text] [Related]
32. Reptile: representative tiling for short read error correction.
Yang X; Dorman KS; Aluru S
Bioinformatics; 2010 Oct; 26(20):2526-33. PubMed ID: 20834037
[TBL] [Abstract][Full Text] [Related]
33. Short reads, circular genome: skimming solid sequence to construct the bighorn sheep mitochondrial genome.
Miller JM; Malenfant RM; Moore SS; Coltman DW
J Hered; 2012; 103(1):140-6. PubMed ID: 21948953
[TBL] [Abstract][Full Text] [Related]
34. Bacterial genome sequencing.
Tettelin H; Feldblyum T
Methods Mol Biol; 2009; 551():231-47. PubMed ID: 19521879
[TBL] [Abstract][Full Text] [Related]
35. Representing genetic variation with synthetic DNA standards.
Deveson IW; Chen WY; Wong T; Hardwick SA; Andersen SB; Nielsen LK; Mattick JS; Mercer TR
Nat Methods; 2016 Sep; 13(9):784-91. PubMed ID: 27502217
[TBL] [Abstract][Full Text] [Related]
36. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding.
McKernan KJ; Peckham HE; Costa GL; McLaughlin SF; Fu Y; Tsung EF; Clouser CR; Duncan C; Ichikawa JK; Lee CC; Zhang Z; Ranade SS; Dimalanta ET; Hyland FC; Sokolsky TD; Zhang L; Sheridan A; Fu H; Hendrickson CL; Li B; Kotler L; Stuart JR; Malek JA; Manning JM; Antipova AA; Perez DS; Moore MP; Hayashibara KC; Lyons MR; Beaudoin RE; Coleman BE; Laptewicz MW; Sannicandro AE; Rhodes MD; Gottimukkala RK; Yang S; Bafna V; Bashir A; MacBride A; Alkan C; Kidd JM; Eichler EE; Reese MG; De La Vega FM; Blanchard AP
Genome Res; 2009 Sep; 19(9):1527-41. PubMed ID: 19546169
[TBL] [Abstract][Full Text] [Related]
37. HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies.
Fan X; Chaisson M; Nakhleh L; Chen K
Genome Res; 2017 May; 27(5):793-800. PubMed ID: 28104618
[TBL] [Abstract][Full Text] [Related]
38. Applications of second generation sequencing technologies in complex disorders.
Bayés M; Heath S; Gut IG
Curr Top Behav Neurosci; 2012; 12():321-43. PubMed ID: 22331695
[TBL] [Abstract][Full Text] [Related]
39. Recurrent miscalling of missense variation from short-read genome sequence data.
Field MA; Burgio G; Chuah A; Al Shekaili J; Hassan B; Al Sukaiti N; Foote SJ; Cook MC; Andrews TD
BMC Genomics; 2019 Jul; 20(Suppl 8):546. PubMed ID: 31307400
[TBL] [Abstract][Full Text] [Related]
40. Artificial duplicate reads in sequencing data of 454 Genome Sequencer FLX System.
Dong H; Chen Y; Shen Y; Wang S; Zhao G; Jin W
Acta Biochim Biophys Sin (Shanghai); 2011 Jun; 43(6):496-500. PubMed ID: 21543404
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
