These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

251 related articles for article (PubMed ID: 20387915)

  • 21. Simulation studies of the fidelity of biomolecular structure ensemble recreation.
    Lätzer J; Eastwood MP; Wolynes PG
    J Chem Phys; 2006 Dec; 125(21):214905. PubMed ID: 17166047
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Hybrid quantum/classical path integral approach for simulation of hydrogen transfer reactions in enzymes.
    Wang Q; Hammes-Schiffer S
    J Chem Phys; 2006 Nov; 125(18):184102. PubMed ID: 17115733
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Improved transition path sampling methods for simulation of rare events.
    Chopra M; Malshe R; Reddy AS; de Pablo JJ
    J Chem Phys; 2008 Apr; 128(14):144104. PubMed ID: 18412420
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Multidimensional generalized-ensemble algorithms for complex systems.
    Mitsutake A; Okamoto Y
    J Chem Phys; 2009 Jun; 130(21):214105. PubMed ID: 19508054
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A divide-and-conquer strategy to improve diffusion sampling in generalized ensemble simulations.
    Min D; Yang W
    J Chem Phys; 2008 Mar; 128(9):094106. PubMed ID: 18331086
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Smart resolution replica exchange: an efficient algorithm for exploring complex energy landscapes.
    Liu P; Voth GA
    J Chem Phys; 2007 Jan; 126(4):045106. PubMed ID: 17286516
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Synergistic approach to improve "alchemical" free energy calculation in rugged energy surface.
    Min D; Li H; Li G; Bitetti-Putzer R; Yang W
    J Chem Phys; 2007 Apr; 126(14):144109. PubMed ID: 17444703
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Probing the free energy landscape of the FBP28WW domain using multiple techniques.
    Periole X; Allen LR; Tamiola K; Mark AE; Paci E
    J Comput Chem; 2009 May; 30(7):1059-68. PubMed ID: 18942730
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously.
    Li W; Takada S
    J Chem Phys; 2009 Jun; 130(21):214108. PubMed ID: 19508057
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Monte Carlo method for computing density of states and quench probability of potential energy and enthalpy landscapes.
    Mauro JC; Loucks RJ; Balakrishnan J; Raghavan S
    J Chem Phys; 2007 May; 126(19):194103. PubMed ID: 17523794
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Efficiency analysis of reaction rate calculation methods using analytical models I: The two-dimensional sharp barrier.
    van Erp TS
    J Chem Phys; 2006 Nov; 125(17):174106. PubMed ID: 17100428
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Simulated scaling method for localized enhanced sampling and simultaneous "alchemical" free energy simulations: a general method for molecular mechanical, quantum mechanical, and quantum mechanical/molecular mechanical simulations.
    Li H; Fajer M; Yang W
    J Chem Phys; 2007 Jan; 126(2):024106. PubMed ID: 17228942
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A selective integrated tempering method.
    Yang L; Qin Gao Y
    J Chem Phys; 2009 Dec; 131(21):214109. PubMed ID: 19968339
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Generalized-ensemble algorithms for molecular simulations of biopolymers.
    Mitsutake A; Sugita Y; Okamoto Y
    Biopolymers; 2001; 60(2):96-123. PubMed ID: 11455545
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Implementation of the bisection sampling method in path integral simulations.
    Major DT; Gao J
    J Mol Graph Model; 2005 Oct; 24(2):121-7. PubMed ID: 15936231
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Trajectory Entropy of Continuous Stochastic Processes at Equilibrium.
    Haas KR; Yang H; Chu JW
    J Phys Chem Lett; 2014 Mar; 5(6):999-1003. PubMed ID: 26270979
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A convective replica-exchange method for sampling new energy basins.
    Spill YG; Bouvier G; Nilges M
    J Comput Chem; 2013 Jan; 34(2):132-40. PubMed ID: 22961200
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Simulating the kinetics and thermodynamics of transitions via forward flux/umbrella sampling.
    Borrero EE; Escobedo FA
    J Phys Chem B; 2009 May; 113(18):6434-45. PubMed ID: 19402728
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Exploring the protein folding free energy landscape: coupling replica exchange method with P3ME/RESPA algorithm.
    Zhou R
    J Mol Graph Model; 2004 May; 22(5):451-63. PubMed ID: 15099840
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Temperature weighted histogram analysis method, replica exchange, and transition paths.
    Gallicchio E; Andrec M; Felts AK; Levy RM
    J Phys Chem B; 2005 Apr; 109(14):6722-31. PubMed ID: 16851756
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.