These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
76 related articles for article (PubMed ID: 20408170)
1. On the use of structural templates for high-resolution docking. Movshovitz-Attias D; London N; Schueler-Furman O Proteins; 2010 Jun; 78(8):1939-49. PubMed ID: 20408170 [TBL] [Abstract][Full Text] [Related]
2. RosettaDock in CAPRI rounds 6-12. Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979 [TBL] [Abstract][Full Text] [Related]
3. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Schueler-Furman O; Wang C; Baker D Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249 [TBL] [Abstract][Full Text] [Related]
4. A simple physical model for the prediction and design of protein-DNA interactions. Havranek JJ; Duarte CM; Baker D J Mol Biol; 2004 Nov; 344(1):59-70. PubMed ID: 15504402 [TBL] [Abstract][Full Text] [Related]
5. Accounting for conformational changes during protein-protein docking. Zacharias M Curr Opin Struct Biol; 2010 Apr; 20(2):180-6. PubMed ID: 20194014 [TBL] [Abstract][Full Text] [Related]
6. Simulation of conformational changes occurring when a protein interacts with its receptor. Costantini S; Colonna G; Facchiano AM Comput Biol Chem; 2007 Jun; 31(3):196-206. PubMed ID: 17500035 [TBL] [Abstract][Full Text] [Related]
7. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information. Mooney C; Pollastri G Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056 [TBL] [Abstract][Full Text] [Related]
8. Recapitulation of protein family divergence using flexible backbone protein design. Saunders CT; Baker D J Mol Biol; 2005 Feb; 346(2):631-44. PubMed ID: 15670610 [TBL] [Abstract][Full Text] [Related]
9. Docking unbound proteins with MIAX: a novel algorithm for protein-protein soft docking. Del Carpio Munoz CA; Peissker T; Yoshimori A; Ichiishi E Genome Inform; 2003; 14():238-49. PubMed ID: 15706538 [TBL] [Abstract][Full Text] [Related]
10. Peptide models XLV: conformational properties of N-formyl-L-methioninamide and its relevance to methionine in proteins. Láng A; Csizmadia IG; Perczel A Proteins; 2005 Feb; 58(3):571-88. PubMed ID: 15616985 [TBL] [Abstract][Full Text] [Related]
11. Classification of protein complexes based on docking difficulty. Vajda S Proteins; 2005 Aug; 60(2):176-80. PubMed ID: 15981248 [TBL] [Abstract][Full Text] [Related]
12. ATTRACT: protein-protein docking in CAPRI using a reduced protein model. Zacharias M Proteins; 2005 Aug; 60(2):252-6. PubMed ID: 15981270 [TBL] [Abstract][Full Text] [Related]
13. Protein-protein docking with backbone flexibility. Wang C; Bradley P; Baker D J Mol Biol; 2007 Oct; 373(2):503-19. PubMed ID: 17825317 [TBL] [Abstract][Full Text] [Related]
15. Protein kinases: docking and homology modeling reliability. Tuccinardi T; Botta M; Giordano A; Martinelli A J Chem Inf Model; 2010 Aug; 50(8):1432-41. PubMed ID: 20726600 [TBL] [Abstract][Full Text] [Related]
16. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential. Liu Z; Dominy BN; Shakhnovich EI J Am Chem Soc; 2004 Jul; 126(27):8515-28. PubMed ID: 15238009 [TBL] [Abstract][Full Text] [Related]
17. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies. Inbar Y; Benyamini H; Nussinov R; Wolfson HJ Phys Biol; 2005 Nov; 2(4):S156-65. PubMed ID: 16280621 [TBL] [Abstract][Full Text] [Related]
18. Identification of the druggable concavity in homology models using the PLB index. Soga S; Shirai H; Kobori M; Hirayama N J Chem Inf Model; 2007; 47(6):2287-92. PubMed ID: 17935312 [TBL] [Abstract][Full Text] [Related]
19. Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design. Humphris EL; Kortemme T Structure; 2008 Dec; 16(12):1777-88. PubMed ID: 19081054 [TBL] [Abstract][Full Text] [Related]
20. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. Kundrotas PJ; Lensink MF; Alexov E Int J Biol Macromol; 2008 Aug; 43(2):198-208. PubMed ID: 18572239 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]