217 related articles for article (PubMed ID: 20422034)
21. siRNA target site secondary structure predictions using local stable substructures.
Heale BS; Soifer HS; Bowers C; Rossi JJ
Nucleic Acids Res; 2005 Feb; 33(3):e30. PubMed ID: 15722476
[TBL] [Abstract][Full Text] [Related]
22. Silencing efficacy prediction: a retrospective study on target mRNA features.
Pascut D; Bedogni G; Tiribelli C
Biosci Rep; 2015 Mar; 35(2):. PubMed ID: 25702798
[TBL] [Abstract][Full Text] [Related]
23. Computational models with thermodynamic and composition features improve siRNA design.
Shabalina SA; Spiridonov AN; Ogurtsov AY
BMC Bioinformatics; 2006 Feb; 7():65. PubMed ID: 16472402
[TBL] [Abstract][Full Text] [Related]
24. Sfold web server for statistical folding and rational design of nucleic acids.
Ding Y; Chan CY; Lawrence CE
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W135-41. PubMed ID: 15215366
[TBL] [Abstract][Full Text] [Related]
25. A protein sensor for siRNA asymmetry.
Tomari Y; Matranga C; Haley B; Martinez N; Zamore PD
Science; 2004 Nov; 306(5700):1377-80. PubMed ID: 15550672
[TBL] [Abstract][Full Text] [Related]
26. Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect.
Ui-Tei K; Naito Y; Nishi K; Juni A; Saigo K
Nucleic Acids Res; 2008 Dec; 36(22):7100-9. PubMed ID: 18988625
[TBL] [Abstract][Full Text] [Related]
27. Design of siRNAs producing unstructured guide-RNAs results in improved RNA interference efficiency.
Patzel V; Rutz S; Dietrich I; Köberle C; Scheffold A; Kaufmann SH
Nat Biotechnol; 2005 Nov; 23(11):1440-4. PubMed ID: 16258545
[TBL] [Abstract][Full Text] [Related]
28. Is the Efficiency of RNA Silencing Evolutionarily Regulated?
Ui-Tei K
Int J Mol Sci; 2016 May; 17(5):. PubMed ID: 27187367
[TBL] [Abstract][Full Text] [Related]
29. Tiling genomes of pathogenic viruses identifies potent antiviral shRNAs and reveals a role for secondary structure in shRNA efficacy.
Tan X; Lu ZJ; Gao G; Xu Q; Hu L; Fellmann C; Li MZ; Qu H; Lowe SW; Hannon GJ; Elledge SJ
Proc Natl Acad Sci U S A; 2012 Jan; 109(3):869-74. PubMed ID: 22219365
[TBL] [Abstract][Full Text] [Related]
30. Functional features defining the efficacy of cholesterol-conjugated, self-deliverable, chemically modified siRNAs.
Shmushkovich T; Monopoli KR; Homsy D; Leyfer D; Betancur-Boissel M; Khvorova A; Wolfson AD
Nucleic Acids Res; 2018 Nov; 46(20):10905-10916. PubMed ID: 30169779
[TBL] [Abstract][Full Text] [Related]
31. siRNA function in RNAi: a chemical modification analysis.
Chiu YL; Rana TM
RNA; 2003 Sep; 9(9):1034-48. PubMed ID: 12923253
[TBL] [Abstract][Full Text] [Related]
32. Enhancement of allele discrimination by introduction of nucleotide mismatches into siRNA in allele-specific gene silencing by RNAi.
Ohnishi Y; Tamura Y; Yoshida M; Tokunaga K; Hohjoh H
PLoS One; 2008 May; 3(5):e2248. PubMed ID: 18493311
[TBL] [Abstract][Full Text] [Related]
33. The design, preparation, and evaluation of asymmetric small interfering RNA for specific gene silencing in mammalian cells.
Chang C; Hong SW; Dua P; Kim S; Lee DK
Methods Mol Biol; 2013; 942():135-52. PubMed ID: 23027049
[TBL] [Abstract][Full Text] [Related]
34. Dual effects of duplex RNA harboring 5'-terminal triphosphate on gene silencing and RIG-I mediated innate immune response.
Baek SE; Kim H; Kim KB; Yoon S; Choe J; Suh W; Jeong YJ; Cho YH; Kim DE
Biochem Biophys Res Commun; 2015 Jan; 456(2):591-7. PubMed ID: 25490387
[TBL] [Abstract][Full Text] [Related]
35. miRNA-embedded shRNAs for Lineage-specific BCL11A Knockdown and Hemoglobin F Induction.
Guda S; Brendel C; Renella R; Du P; Bauer DE; Canver MC; Grenier JK; Grimson AW; Kamran SC; Thornton J; de Boer H; Root DE; Milsom MD; Orkin SH; Gregory RI; Williams DA
Mol Ther; 2015 Sep; 23(9):1465-74. PubMed ID: 26080908
[TBL] [Abstract][Full Text] [Related]
36. Functional and intracellular localization properties of U6 promoter-expressed siRNAs, shRNAs, and chimeric VA1 shRNAs in mammalian cells.
Lee NS; Kim DH; Alluin J; Robbins M; Gu S; Li H; Kim J; Salvaterra PM; Rossi JJ
RNA; 2008 Sep; 14(9):1823-33. PubMed ID: 18697923
[TBL] [Abstract][Full Text] [Related]
37. Short-term cytotoxic effects and long-term instability of RNAi delivered using lentiviral vectors.
Fish RJ; Kruithof EK
BMC Mol Biol; 2004 Aug; 5():9. PubMed ID: 15291968
[TBL] [Abstract][Full Text] [Related]
38. Short interfering RNA strand selection is independent of dsRNA processing polarity during RNAi in Drosophila.
Preall JB; He Z; Gorra JM; Sontheimer EJ
Curr Biol; 2006 Mar; 16(5):530-5. PubMed ID: 16527750
[TBL] [Abstract][Full Text] [Related]
39. Efficient siRNA selection using hybridization thermodynamics.
Lu ZJ; Mathews DH
Nucleic Acids Res; 2008 Feb; 36(2):640-7. PubMed ID: 18073195
[TBL] [Abstract][Full Text] [Related]
40. A structural interpretation of the effect of GC-content on efficiency of RNA interference.
Chan CY; Carmack CS; Long DD; Maliyekkel A; Shao Y; Roninson IB; Ding Y
BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S33. PubMed ID: 19208134
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
