451 related articles for article (PubMed ID: 20426874)
1. BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions.
Schellenberger J; Park JO; Conrad TM; Palsson BØ
BMC Bioinformatics; 2010 Apr; 11():213. PubMed ID: 20426874
[TBL] [Abstract][Full Text] [Related]
2. BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.
King ZA; Lu J; Dräger A; Miller P; Federowicz S; Lerman JA; Ebrahim A; Palsson BO; Lewis NE
Nucleic Acids Res; 2016 Jan; 44(D1):D515-22. PubMed ID: 26476456
[TBL] [Abstract][Full Text] [Related]
3. BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree.
Norsigian CJ; Pusarla N; McConn JL; Yurkovich JT; Dräger A; Palsson BO; King Z
Nucleic Acids Res; 2020 Jan; 48(D1):D402-D406. PubMed ID: 31696234
[TBL] [Abstract][Full Text] [Related]
4. BiKEGG: a COBRA toolbox extension for bridging the BiGG and KEGG databases.
Jamialahmadi O; Motamedian E; Hashemi-Najafabadi S
Mol Biosyst; 2016 Oct; 12(11):3459-3466. PubMed ID: 27714042
[TBL] [Abstract][Full Text] [Related]
5. Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
Karlsen E; Schulz C; Almaas E
BMC Bioinformatics; 2018 Dec; 19(1):467. PubMed ID: 30514205
[TBL] [Abstract][Full Text] [Related]
6. Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool.
Oliveira A; Cunha E; Cruz F; Capela J; Sequeira JC; Sampaio M; Sampaio C; Dias O
J Integr Bioinform; 2022 Sep; 19(3):. PubMed ID: 36054839
[TBL] [Abstract][Full Text] [Related]
7. Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide.
Orth JD; Fleming RM; Palsson BØ
EcoSal Plus; 2010 Sep; 4(1):. PubMed ID: 26443778
[TBL] [Abstract][Full Text] [Related]
8. A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.
Nogales J; Palsson BØ; Thiele I
BMC Syst Biol; 2008 Sep; 2():79. PubMed ID: 18793442
[TBL] [Abstract][Full Text] [Related]
9. Fluxer: a web application to compute, analyze and visualize genome-scale metabolic flux networks.
Hari A; Lobo D
Nucleic Acids Res; 2020 Jul; 48(W1):W427-W435. PubMed ID: 32442279
[TBL] [Abstract][Full Text] [Related]
10. An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.
Erdrich P; Steuer R; Klamt S
BMC Syst Biol; 2015 Aug; 9():48. PubMed ID: 26286864
[TBL] [Abstract][Full Text] [Related]
11. MIRAGE: a functional genomics-based approach for metabolic network model reconstruction and its application to cyanobacteria networks.
Vitkin E; Shlomi T
Genome Biol; 2012 Nov; 13(11):R111. PubMed ID: 23194418
[TBL] [Abstract][Full Text] [Related]
12. MrBac: a web server for draft metabolic network reconstructions for bacteria.
Liao YC; Chen JC; Tsai MH; Tang YH; Chen FC; Hsiung CA
Bioeng Bugs; 2011; 2(5):284-7. PubMed ID: 22008641
[TBL] [Abstract][Full Text] [Related]
13. Reconstructing genome-scale metabolic models with merlin.
Dias O; Rocha M; Ferreira EC; Rocha I
Nucleic Acids Res; 2015 Apr; 43(8):3899-910. PubMed ID: 25845595
[TBL] [Abstract][Full Text] [Related]
14. DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations.
Heinken A; Magnúsdóttir S; Fleming RMT; Thiele I
Bioinformatics; 2021 Nov; 37(21):3974-3975. PubMed ID: 34473240
[TBL] [Abstract][Full Text] [Related]
15. Assimilating genome-scale metabolic reconstructions with modelBorgifier.
Sauls JT; Buescher JM
Bioinformatics; 2014 Apr; 30(7):1036-8. PubMed ID: 24371155
[TBL] [Abstract][Full Text] [Related]
16. Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain.
Gavai AK; Supandi F; Hettling H; Murrell P; Leunissen JA; van Beek JH
PLoS One; 2015; 10(3):e0119016. PubMed ID: 25806817
[TBL] [Abstract][Full Text] [Related]
17. Software platforms to facilitate reconstructing genome-scale metabolic networks.
Hamilton JJ; Reed JL
Environ Microbiol; 2014 Jan; 16(1):49-59. PubMed ID: 24148076
[TBL] [Abstract][Full Text] [Related]
18. ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
Martyushenko N; Almaas E
BMC Bioinformatics; 2019 Jan; 20(1):56. PubMed ID: 30691403
[TBL] [Abstract][Full Text] [Related]
19. Gramene 2018: unifying comparative genomics and pathway resources for plant research.
Tello-Ruiz MK; Naithani S; Stein JC; Gupta P; Campbell M; Olson A; Wei S; Preece J; Geniza MJ; Jiao Y; Lee YK; Wang B; Mulvaney J; Chougule K; Elser J; Al-Bader N; Kumari S; Thomason J; Kumar V; Bolser DM; Naamati G; Tapanari E; Fonseca N; Huerta L; Iqbal H; Keays M; Munoz-Pomer Fuentes A; Tang A; Fabregat A; D'Eustachio P; Weiser J; Stein LD; Petryszak R; Papatheodorou I; Kersey PJ; Lockhart P; Taylor C; Jaiswal P; Ware D
Nucleic Acids Res; 2018 Jan; 46(D1):D1181-D1189. PubMed ID: 29165610
[TBL] [Abstract][Full Text] [Related]
20. MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases.
Kumar A; Suthers PF; Maranas CD
BMC Bioinformatics; 2012 Jan; 13():6. PubMed ID: 22233419
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
