These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 20431150)

  • 1. Alignments of RNA structures.
    Blin G; Denise A; Dulucq S; Herrbach C; Touzet H
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(2):309-22. PubMed ID: 20431150
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RADAR: a web server for RNA data analysis and research.
    Khaladkar M; Bellofatto V; Wang JT; Tian B; Shapiro BA
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W300-4. PubMed ID: 17517784
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A general edit distance between RNA structures.
    Jiang T; Lin G; Ma B; Zhang K
    J Comput Biol; 2002; 9(2):371-88. PubMed ID: 12015887
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F; Ponty Y; Lorenz WA; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
    Gruber AR; Neuböck R; Hofacker IL; Washietl S
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W335-8. PubMed ID: 17452347
    [TBL] [Abstract][Full Text] [Related]  

  • 6. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNA structural alignments, part II: non-Sankoff approaches for structural alignments.
    Asai K; Hamada M
    Methods Mol Biol; 2014; 1097():291-301. PubMed ID: 24639165
    [TBL] [Abstract][Full Text] [Related]  

  • 8. STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time.
    Dalli D; Wilm A; Mainz I; Steger G
    Bioinformatics; 2006 Jul; 22(13):1593-9. PubMed ID: 16613908
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
    Washietl S; Bernhart SH; Kellis M
    Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
    [TBL] [Abstract][Full Text] [Related]  

  • 10. [A method for prediction of conserved RNA secondary structures].
    Mironov AA
    Mol Biol (Mosk); 2007; 41(4):711-8. PubMed ID: 17936993
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNA structure alignment by a unit-vector approach.
    Capriotti E; Marti-Renom MA
    Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Alignment of RNA base pairing probability matrices.
    Hofacker IL; Bernhart SH; Stadler PF
    Bioinformatics; 2004 Sep; 20(14):2222-7. PubMed ID: 15073017
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Automated alignment of RNA sequences to pseudoknotted structures.
    Tabaska JE; Stormo GD
    Proc Int Conf Intell Syst Mol Biol; 1997; 5():311-8. PubMed ID: 9322055
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Prediction of consensus RNA secondary structures including pseudoknots.
    Witwer C; Hofacker IL; Stadler PF
    IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):66-77. PubMed ID: 17048382
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Xu X; Ji Y; Stormo GD
    Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A memory efficient method for structure-based RNA multiple alignment.
    DeBlasio D; Bruand J; Zhang S
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA structural alignments, part I: Sankoff-based approaches for structural alignments.
    Havgaard JH; Gorodkin J
    Methods Mol Biol; 2014; 1097():275-90. PubMed ID: 24639164
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Pure multiple RNA secondary structure alignments: a progressive profile approach.
    Höchsmann M; Voss B; Giegerich R
    IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(1):53-62. PubMed ID: 17048408
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Havgaard JH; Lyngsø RB; Gorodkin J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A new distance for high level RNA secondary structure comparison.
    Allali J; Sagot MF
    IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(1):3-14. PubMed ID: 17044160
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.