753 related articles for article (PubMed ID: 20431534)
1. The HADDOCK web server for data-driven biomolecular docking.
de Vries SJ; van Dijk M; Bonvin AM
Nat Protoc; 2010 May; 5(5):883-97. PubMed ID: 20431534
[TBL] [Abstract][Full Text] [Related]
2. CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.
de Vries SJ; Bonvin AM
PLoS One; 2011 Mar; 6(3):e17695. PubMed ID: 21464987
[TBL] [Abstract][Full Text] [Related]
3. Modeling protein-protein complexes using the HADDOCK webserver "modeling protein complexes with HADDOCK".
van Zundert GC; Bonvin AM
Methods Mol Biol; 2014; 1137():163-79. PubMed ID: 24573481
[TBL] [Abstract][Full Text] [Related]
4. The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.
van Zundert GCP; Rodrigues JPGLM; Trellet M; Schmitz C; Kastritis PL; Karaca E; Melquiond ASJ; van Dijk M; de Vries SJ; Bonvin AMJJ
J Mol Biol; 2016 Feb; 428(4):720-725. PubMed ID: 26410586
[TBL] [Abstract][Full Text] [Related]
5. Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.
Karaca E; Melquiond AS; de Vries SJ; Kastritis PL; Bonvin AM
Mol Cell Proteomics; 2010 Aug; 9(8):1784-94. PubMed ID: 20305088
[TBL] [Abstract][Full Text] [Related]
6. Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.
de Vries SJ; Melquiond AS; Kastritis PL; Karaca E; Bordogna A; van Dijk M; Rodrigues JP; Bonvin AM
Proteins; 2010 Nov; 78(15):3242-9. PubMed ID: 20718048
[TBL] [Abstract][Full Text] [Related]
7. MTMDAT-HADDOCK: high-throughput, protein complex structure modeling based on limited proteolysis and mass spectrometry.
Hennig J; de Vries SJ; Hennig KD; Randles L; Walters KJ; Sunnerhagen M; Bonvin AM
BMC Struct Biol; 2012 Nov; 12():29. PubMed ID: 23153250
[TBL] [Abstract][Full Text] [Related]
8. Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
Vangone A; Rodrigues JP; Xue LC; van Zundert GC; Geng C; Kurkcuoglu Z; Nellen M; Narasimhan S; Karaca E; van Dijk M; Melquiond AS; Visscher KM; Trellet M; Kastritis PL; Bonvin AM
Proteins; 2017 Mar; 85(3):417-423. PubMed ID: 27802573
[TBL] [Abstract][Full Text] [Related]
9. Protein-Protein Modeling Using Cryo-EM Restraints.
Trellet M; van Zundert G; Bonvin AMJJ
Methods Mol Biol; 2020; 2112():145-162. PubMed ID: 32006284
[TBL] [Abstract][Full Text] [Related]
10. HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets.
de Vries SJ; van Dijk AD; Krzeminski M; van Dijk M; Thureau A; Hsu V; Wassenaar T; Bonvin AM
Proteins; 2007 Dec; 69(4):726-33. PubMed ID: 17803234
[TBL] [Abstract][Full Text] [Related]
11. Quantitative use of chemical shifts for the modeling of protein complexes.
Stratmann D; Boelens R; Bonvin AM
Proteins; 2011 Sep; 79(9):2662-70. PubMed ID: 21744392
[TBL] [Abstract][Full Text] [Related]
12. FireDock: a web server for fast interaction refinement in molecular docking.
Mashiach E; Schneidman-Duhovny D; Andrusier N; Nussinov R; Wolfson HJ
Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W229-32. PubMed ID: 18424796
[TBL] [Abstract][Full Text] [Related]
13. Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.
Geng C; Narasimhan S; Rodrigues JP; Bonvin AM
Methods Mol Biol; 2017; 1561():109-138. PubMed ID: 28236236
[TBL] [Abstract][Full Text] [Related]
14. HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm.
Zhou P; Jin B; Li H; Huang SY
Nucleic Acids Res; 2018 Jul; 46(W1):W443-W450. PubMed ID: 29746661
[TBL] [Abstract][Full Text] [Related]
15. The HADDOCK2.4 web server for integrative modeling of biomolecular complexes.
Honorato RV; Trellet ME; Jiménez-García B; Schaarschmidt JJ; Giulini M; Reys V; Koukos PI; Rodrigues JPGLM; Karaca E; van Zundert GCP; Roel-Touris J; van Noort CW; Jandová Z; Melquiond ASJ; Bonvin AMJJ
Nat Protoc; 2024 Jun; ():. PubMed ID: 38886530
[TBL] [Abstract][Full Text] [Related]
16. An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.
Koukos PI; Roel-Touris J; Ambrosetti F; Geng C; Schaarschmidt J; Trellet ME; Melquiond ASJ; Xue LC; Honorato RV; Moreira I; Kurkcuoglu Z; Vangone A; Bonvin AMJJ
Proteins; 2020 Aug; 88(8):1029-1036. PubMed ID: 31886559
[TBL] [Abstract][Full Text] [Related]
17. A web interface for easy flexible protein-protein docking with ATTRACT.
de Vries SJ; Schindler CE; Chauvot de Beauchêne I; Zacharias M
Biophys J; 2015 Feb; 108(3):462-5. PubMed ID: 25650913
[TBL] [Abstract][Full Text] [Related]
18. Understanding Docking Complexes of Macromolecules Using HADDOCK: The Synergy between Experimental Data and Computations.
Saponaro A; Maione V; Bonvin AMJJ; Cantini F
Bio Protoc; 2020 Oct; 10(20):e3793. PubMed ID: 33659447
[TBL] [Abstract][Full Text] [Related]
19. ORBIT: an integrated environment for user-customized bioinformatics tools.
Bellgard MI; Hiew HL; Hunter A; Wiebrands M
Bioinformatics; 1999 Oct; 15(10):847-51. PubMed ID: 10705437
[TBL] [Abstract][Full Text] [Related]
20. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
Dominguez C; Boelens R; Bonvin AM
J Am Chem Soc; 2003 Feb; 125(7):1731-7. PubMed ID: 12580598
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]