These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
763 related articles for article (PubMed ID: 20431534)
21. InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information. Yu J; Vavrusa M; Andreani J; Rey J; Tufféry P; Guerois R Nucleic Acids Res; 2016 Jul; 44(W1):W542-9. PubMed ID: 27131368 [TBL] [Abstract][Full Text] [Related]
22. GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters. Park T; Baek M; Lee H; Seok C J Comput Chem; 2019 Oct; 40(27):2413-2417. PubMed ID: 31173387 [TBL] [Abstract][Full Text] [Related]
23. NPDock: a web server for protein-nucleic acid docking. Tuszynska I; Magnus M; Jonak K; Dawson W; Bujnicki JM Nucleic Acids Res; 2015 Jul; 43(W1):W425-30. PubMed ID: 25977296 [TBL] [Abstract][Full Text] [Related]
24. Solvated docking: introducing water into the modelling of biomolecular complexes. van Dijk AD; Bonvin AM Bioinformatics; 2006 Oct; 22(19):2340-7. PubMed ID: 16899489 [TBL] [Abstract][Full Text] [Related]
25. M3: an integrative framework for structure determination of molecular machines. Karaca E; Rodrigues JPGLM; Graziadei A; Bonvin AMJJ; Carlomagno T Nat Methods; 2017 Sep; 14(9):897-902. PubMed ID: 28805795 [TBL] [Abstract][Full Text] [Related]
26. Fragment-based docking: development of the CHARMMing Web user interface as a platform for computer-aided drug design. Pevzner Y; Frugier E; Schalk V; Caflisch A; Woodcock HL J Chem Inf Model; 2014 Sep; 54(9):2612-20. PubMed ID: 25151852 [TBL] [Abstract][Full Text] [Related]
27. Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility. van Dijk M; van Dijk AD; Hsu V; Boelens R; Bonvin AM Nucleic Acids Res; 2006; 34(11):3317-25. PubMed ID: 16820531 [TBL] [Abstract][Full Text] [Related]
28. Information-driven modeling of protein-peptide complexes. Trellet M; Melquiond AS; Bonvin AM Methods Mol Biol; 2015; 1268():221-39. PubMed ID: 25555727 [TBL] [Abstract][Full Text] [Related]
29. Defining the limits of homology modeling in information-driven protein docking. Rodrigues JP; Melquiond AS; Karaca E; Trellet M; van Dijk M; van Zundert GC; Schmitz C; de Vries SJ; Bordogna A; Bonati L; Kastritis PL; Bonvin AM Proteins; 2013 Dec; 81(12):2119-28. PubMed ID: 23913867 [TBL] [Abstract][Full Text] [Related]
31. Protinfo PPC: a web server for atomic level prediction of protein complexes. Kittichotirat W; Guerquin M; Bumgarner RE; Samudrala R Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W519-25. PubMed ID: 19420059 [TBL] [Abstract][Full Text] [Related]
32. GRAMM-X public web server for protein-protein docking. Tovchigrechko A; Vakser IA Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W310-4. PubMed ID: 16845016 [TBL] [Abstract][Full Text] [Related]
33. Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data. van Zundert GCP; Melquiond ASJ; Bonvin AMJJ Structure; 2015 May; 23(5):949-960. PubMed ID: 25914056 [TBL] [Abstract][Full Text] [Related]
35. CovalentDock Cloud: a web server for automated covalent docking. Ouyang X; Zhou S; Ge Z; Li R; Kwoh CK Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W329-32. PubMed ID: 23677616 [TBL] [Abstract][Full Text] [Related]
36. InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps. Quignot C; Postic G; Bret H; Rey J; Granger P; Murail S; Chacón P; Andreani J; Tufféry P; Guerois R Nucleic Acids Res; 2021 Jul; 49(W1):W277-W284. PubMed ID: 33978743 [TBL] [Abstract][Full Text] [Related]
37. HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures. He J; Wang J; Tao H; Xiao Y; Huang SY Nucleic Acids Res; 2019 Jul; 47(W1):W35-W42. PubMed ID: 31114906 [TBL] [Abstract][Full Text] [Related]
38. RosettaBackrub--a web server for flexible backbone protein structure modeling and design. Lauck F; Smith CA; Friedland GF; Humphris EL; Kortemme T Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W569-75. PubMed ID: 20462859 [TBL] [Abstract][Full Text] [Related]
39. Large-scale structural modeling of protein complexes at low resolution. Zhu Z; Tovchigrechko A; Baronova T; Gao Y; Douguet D; O'Toole N; Vakser IA J Bioinform Comput Biol; 2008 Aug; 6(4):789-810. PubMed ID: 18763743 [TBL] [Abstract][Full Text] [Related]
40. PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains. Aleksiev T; Potestio R; Pontiggia F; Cozzini S; Micheletti C Bioinformatics; 2009 Oct; 25(20):2743-4. PubMed ID: 19696046 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]