These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

213 related articles for article (PubMed ID: 20435670)

  • 1. PathPred: an enzyme-catalyzed metabolic pathway prediction server.
    Moriya Y; Shigemizu D; Hattori M; Tokimatsu T; Kotera M; Goto S; Kanehisa M
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W138-43. PubMed ID: 20435670
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways.
    Oh M; Yamada T; Hattori M; Goto S; Kanehisa M
    J Chem Inf Model; 2007; 47(4):1702-12. PubMed ID: 17516640
    [TBL] [Abstract][Full Text] [Related]  

  • 3. E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.
    Yamanishi Y; Hattori M; Kotera M; Goto S; Kanehisa M
    Bioinformatics; 2009 Jun; 25(12):i179-86. PubMed ID: 19477985
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of reaction organization patterns that naturally cluster enzymatic transformations.
    Vazquez-Hernandez C; Loza A; Peguero-Sanchez E; Segovia L; Gutierrez-Rios RM
    BMC Syst Biol; 2018 May; 12(1):63. PubMed ID: 29848336
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Generalized reaction patterns for prediction of unknown enzymatic reactions.
    Shimizu Y; Hattori M; Goto S; Kanehisa M
    Genome Inform; 2008; 20():149-58. PubMed ID: 19425130
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reactant pairs and reaction organization patterns produced by a new rule-based approach.
    Vazquez-Hernandez C; Loza A; Gutierrez-Rios RM
    BMC Res Notes; 2018 Aug; 11(1):608. PubMed ID: 30143048
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Network design and analysis for multi-enzyme biocatalysis.
    Blaß LK; Weyler C; Heinzle E
    BMC Bioinformatics; 2017 Aug; 18(1):366. PubMed ID: 28797226
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
    Caspi R; Altman T; Dreher K; Fulcher CA; Subhraveti P; Keseler IM; Kothari A; Krummenacker M; Latendresse M; Mueller LA; Ong Q; Paley S; Pujar A; Shearer AG; Travers M; Weerasinghe D; Zhang P; Karp PD
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D742-53. PubMed ID: 22102576
    [TBL] [Abstract][Full Text] [Related]  

  • 9. LIGAND: chemical database of enzyme reactions.
    Goto S; Nishioka T; Kanehisa M
    Nucleic Acids Res; 2000 Jan; 28(1):380-2. PubMed ID: 10592281
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Metabolic pathfinding using RPAIR annotation.
    Faust K; Croes D; van Helden J
    J Mol Biol; 2009 May; 388(2):390-414. PubMed ID: 19281817
    [TBL] [Abstract][Full Text] [Related]  

  • 11. LIGAND: database of chemical compounds and reactions in biological pathways.
    Goto S; Okuno Y; Hattori M; Nishioka T; Kanehisa M
    Nucleic Acids Res; 2002 Jan; 30(1):402-4. PubMed ID: 11752349
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes.
    Ellis LB; Hershberger CD; Bryan EM; Wackett LP
    Nucleic Acids Res; 2001 Jan; 29(1):340-3. PubMed ID: 11125131
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Predicting metabolic pathways by sub-network extraction.
    Faust K; van Helden J
    Methods Mol Biol; 2012; 804():107-30. PubMed ID: 22144151
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction.
    Tabei Y; Yamanishi Y; Kotera M
    Bioinformatics; 2016 Jun; 32(12):i278-i287. PubMed ID: 27307627
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.
    Cottret L; Wildridge D; Vinson F; Barrett MP; Charles H; Sagot MF; Jourdan F
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W132-7. PubMed ID: 20444866
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Rhea--a manually curated resource of biochemical reactions.
    Alcántara R; Axelsen KB; Morgat A; Belda E; Coudert E; Bridge A; Cao H; de Matos P; Ennis M; Turner S; Owen G; Bougueleret L; Xenarios I; Steinbeck C
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D754-60. PubMed ID: 22135291
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
    Caspi R; Altman T; Billington R; Dreher K; Foerster H; Fulcher CA; Holland TA; Keseler IM; Kothari A; Kubo A; Krummenacker M; Latendresse M; Mueller LA; Ong Q; Paley S; Subhraveti P; Weaver DS; Weerasinghe D; Zhang P; Karp PD
    Nucleic Acids Res; 2014 Jan; 42(Database issue):D459-71. PubMed ID: 24225315
    [TBL] [Abstract][Full Text] [Related]  

  • 18. LIGAND database for enzymes, compounds and reactions.
    Goto S; Nishioka T; Kanehisa M
    Nucleic Acids Res; 1999 Jan; 27(1):377-9. PubMed ID: 9847234
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Metabolome-scale de novo pathway reconstruction using regioisomer-sensitive graph alignments.
    Yamanishi Y; Tabei Y; Kotera M
    Bioinformatics; 2015 Jun; 31(12):i161-70. PubMed ID: 26072478
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MetaCyc: a multiorganism database of metabolic pathways and enzymes.
    Caspi R; Foerster H; Fulcher CA; Hopkinson R; Ingraham J; Kaipa P; Krummenacker M; Paley S; Pick J; Rhee SY; Tissier C; Zhang P; Karp PD
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D511-6. PubMed ID: 16381923
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.