BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

176 related articles for article (PubMed ID: 20444865)

  • 1. MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotation.
    Hou H; Zhao F; Zhou L; Zhu E; Teng H; Li X; Bao Q; Wu J; Sun Z
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W732-6. PubMed ID: 20444865
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer.
    Liu Q; Chen C; Shen E; Zhao F; Sun Z; Wu J
    Genomics; 2012 Mar; 99(3):178-82. PubMed ID: 22226708
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GenomeView: a next-generation genome browser.
    Abeel T; Van Parys T; Saeys Y; Galagan J; Van de Peer Y
    Nucleic Acids Res; 2012 Jan; 40(2):e12. PubMed ID: 22102585
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ZOOM Lite: next-generation sequencing data mapping and visualization software.
    Zhang Z; Lin H; Ma B
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W743-8. PubMed ID: 20530531
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations.
    Dereeper A; Homa F; Andres G; Sempere G; Sarah G; Hueber Y; Dufayard JF; Ruiz M
    Nucleic Acids Res; 2015 Jul; 43(W1):W295-300. PubMed ID: 26040700
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data.
    Azam S; Rathore A; Shah TM; Telluri M; Amindala B; Ruperao P; Katta MA; Varshney RK
    PLoS One; 2014; 9(7):e101754. PubMed ID: 25003610
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BamView: visualizing and interpretation of next-generation sequencing read alignments.
    Carver T; Harris SR; Otto TD; Berriman M; Parkhill J; McQuillan JA
    Brief Bioinform; 2013 Mar; 14(2):203-12. PubMed ID: 22253280
    [TBL] [Abstract][Full Text] [Related]  

  • 8. STAR: an integrated solution to management and visualization of sequencing data.
    Wang T; Liu J; Shen L; Tonti-Filippini J; Zhu Y; Jia H; Lister R; Whitaker JW; Ecker JR; Millar AH; Ren B; Wang W
    Bioinformatics; 2013 Dec; 29(24):3204-10. PubMed ID: 24078702
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.
    Dereeper A; Nicolas S; Le Cunff L; Bacilieri R; Doligez A; Peros JP; Ruiz M; This P
    BMC Bioinformatics; 2011 May; 12():134. PubMed ID: 21545712
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data.
    Barozzi I; Termanini A; Minucci S; Natoli G
    Biol Direct; 2011 Oct; 6():51. PubMed ID: 21978789
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.
    Nagasaki H; Mochizuki T; Kodama Y; Saruhashi S; Morizaki S; Sugawara H; Ohyanagi H; Kurata N; Okubo K; Takagi T; Kaminuma E; Nakamura Y
    DNA Res; 2013 Aug; 20(4):383-90. PubMed ID: 23657089
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cruxome: a powerful tool for annotating, interpreting and reporting genetic variants.
    Han Q; Yang Y; Wu S; Liao Y; Zhang S; Liang H; Cram DS; Zhang Y
    BMC Genomics; 2021 Jun; 22(1):407. PubMed ID: 34082700
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Savant Genome Browser 2: visualization and analysis for population-scale genomics.
    Fiume M; Smith EJ; Brook A; Strbenac D; Turner B; Mezlini AM; Robinson MD; Wodak SJ; Brudno M
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W615-21. PubMed ID: 22638571
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NGS_SNPAnalyzer: a desktop software supporting genome projects by identifying and visualizing sequence variations from next-generation sequencing data.
    Lee DJ; Kwon T; Kim CK; Seol YJ; Park DS; Lee TH; Ahn BO
    Genes Genomics; 2020 Nov; 42(11):1311-1317. PubMed ID: 32980993
    [TBL] [Abstract][Full Text] [Related]  

  • 15. mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.
    Vellarikkal SK; Dhiman H; Joshi K; Hasija Y; Sivasubbu S; Scaria V
    Hum Mutat; 2015 Apr; 36(4):419-24. PubMed ID: 25677119
    [TBL] [Abstract][Full Text] [Related]  

  • 16. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development.
    Lv Y; Liu Y; Zhao H
    BMC Genomics; 2016 Apr; 17():290. PubMed ID: 27079510
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DaMold: A data-mining platform for variant annotation and visualization in molecular diagnostics research.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    Hum Mutat; 2017 Jul; 38(7):778-787. PubMed ID: 28397319
    [TBL] [Abstract][Full Text] [Related]  

  • 18. QualitySNPng: a user-friendly SNP detection and visualization tool.
    Nijveen H; van Kaauwen M; Esselink DG; Hoegen B; Vosman B
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W587-90. PubMed ID: 23632165
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.
    Edmonson MN; Zhang J; Yan C; Finney RP; Meerzaman DM; Buetow KH
    Bioinformatics; 2011 Mar; 27(6):865-6. PubMed ID: 21278191
    [TBL] [Abstract][Full Text] [Related]  

  • 20. inGAP-sv: a novel scheme to identify and visualize structural variation from paired end mapping data.
    Qi J; Zhao F
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W567-75. PubMed ID: 21715388
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.