BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 20456856)

  • 1. Natural polyphenols as inhibitors of amyloid aggregation. Molecular dynamics study of GNNQQNY heptapeptide decamer.
    Berhanu WM; Masunov AE
    Biophys Chem; 2010 Jun; 149(1-2):12-21. PubMed ID: 20456856
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing.
    Lipfert J; Franklin J; Wu F; Doniach S
    J Mol Biol; 2005 Jun; 349(3):648-58. PubMed ID: 15896350
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
    Ma B; Nussinov R
    J Mol Biol; 2000 Mar; 296(4):1091-104. PubMed ID: 10686106
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35.
    Zheng J; Ma B; Tsai CJ; Nussinov R
    Biophys J; 2006 Aug; 91(3):824-33. PubMed ID: 16679374
    [TBL] [Abstract][Full Text] [Related]  

  • 5. HRMAS 1H NMR conformational study of the resin-bound amyloid-forming peptide GNNQQNY from the yeast prion Sup35.
    Andrey SB; Chan ML; Power WP
    J Phys Chem A; 2010 Mar; 114(10):3457-65. PubMed ID: 20155963
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Factors that affect the degree of twist in beta-sheet structures: a molecular dynamics simulation study of a cross-beta filament of the GNNQQNY peptide.
    Periole X; Rampioni A; Vendruscolo M; Mark AE
    J Phys Chem B; 2009 Feb; 113(6):1728-37. PubMed ID: 19154133
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Stability of single sheet GNNQQNY aggregates analyzed by replica exchange molecular dynamics: antiparallel versus parallel association.
    Vitagliano L; Esposito L; Pedone C; De Simone A
    Biochem Biophys Res Commun; 2008 Dec; 377(4):1036-41. PubMed ID: 18938138
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35.
    Gsponer J; Haberthür U; Caflisch A
    Proc Natl Acad Sci U S A; 2003 Apr; 100(9):5154-9. PubMed ID: 12700355
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Atomistic mechanism of polyphenol amyloid aggregation inhibitors: molecular dynamics study of Curcumin, Exifone, and Myricetin interaction with the segment of tau peptide oligomer.
    Berhanu WM; Masunov AE
    J Biomol Struct Dyn; 2015; 33(7):1399-411. PubMed ID: 25093402
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Side chain interactions determine the amyloid organization: a single layer beta-sheet molecular structure of the calcitonin peptide segment 15-19.
    Zanuy D; Haspel N; Tsai HH; Ma B; Gunasekaran K; Wolfson HJ; Nussinov R
    Phys Biol; 2004 Jun; 1(1-2):89-99. PubMed ID: 16204826
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dual binding modes of Congo red to amyloid protofibril surface observed in molecular dynamics simulations.
    Wu C; Wang Z; Lei H; Zhang W; Duan Y
    J Am Chem Soc; 2007 Feb; 129(5):1225-32. PubMed ID: 17263405
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular dynamics simulations and free energy analyses on the dimer formation of an amyloidogenic heptapeptide from human beta2-microglobulin: implication for the protofibril structure.
    Lei H; Wu C; Wang Z; Duan Y
    J Mol Biol; 2006 Mar; 356(4):1049-63. PubMed ID: 16403526
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Alternative packing modes leading to amyloid polymorphism in five fragments studied with molecular dynamics.
    Berhanu WM; Masunov AE
    Biopolymers; 2012; 98(2):131-44. PubMed ID: 22020870
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The role of phenolic OH groups of flavonoid compounds with H-bond formation ability to suppress amyloid mature fibrils by destabilizing β-sheet conformation of monomeric Aβ17-42.
    Andarzi Gargari S; Barzegar A; Tarinejad A
    PLoS One; 2018; 13(6):e0199541. PubMed ID: 29953467
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A cylinder-shaped double ribbon structure formed by an amyloid hairpin peptide derived from the beta-sheet of murine PrP: an X-ray and molecular dynamics simulation study.
    Croixmarie V; Briki F; David G; Coïc YM; Ovtracht L; Doucet J; Jamin N; Sanson A
    J Struct Biol; 2005 Jun; 150(3):284-99. PubMed ID: 15890277
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A molecular dynamics approach to the structural characterization of amyloid aggregation.
    Cecchini M; Curcio R; Pappalardo M; Melki R; Caflisch A
    J Mol Biol; 2006 Apr; 357(4):1306-21. PubMed ID: 16483608
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure-based design and study of non-amyloidogenic, double N-methylated IAPP amyloid core sequences as inhibitors of IAPP amyloid formation and cytotoxicity.
    Kapurniotu A; Schmauder A; Tenidis K
    J Mol Biol; 2002 Jan; 315(3):339-50. PubMed ID: 11786016
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
    Sawaya MR; Sambashivan S; Nelson R; Ivanova MI; Sievers SA; Apostol MI; Thompson MJ; Balbirnie M; Wiltzius JJ; McFarlane HT; Madsen AØ; Riekel C; Eisenberg D
    Nature; 2007 May; 447(7143):453-7. PubMed ID: 17468747
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular dynamic simulation of wild type and mutants of the polymorphic amyloid NNQNTF segments of elk prion: structural stability and thermodynamic of association.
    Berhanu WM; Masunov AE
    Biopolymers; 2011 Sep; 95(9):573-90. PubMed ID: 21384336
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular dynamics simulations to investigate the structural stability and aggregation behavior of the GGVVIA oligomers derived from amyloid beta peptide.
    Chang LK; Zhao JH; Liu HL; Liu KT; Chen JT; Tsai WB; Ho Y
    J Biomol Struct Dyn; 2009 Jun; 26(6):731-40. PubMed ID: 19385701
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.