157 related articles for article (PubMed ID: 20460470)
1. VISIBIOweb: visualization and layout services for BioPAX pathway models.
Dilek A; Belviranli ME; Dogrusoz U
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W150-4. PubMed ID: 20460470
[TBL] [Abstract][Full Text] [Related]
2. ChiBE: interactive visualization and manipulation of BioPAX pathway models.
Babur O; Dogrusoz U; Demir E; Sander C
Bioinformatics; 2010 Feb; 26(3):429-31. PubMed ID: 20007251
[TBL] [Abstract][Full Text] [Related]
3. SBGNViz: A Tool for Visualization and Complexity Management of SBGN Process Description Maps.
Sari M; Bahceci I; Dogrusoz U; Sumer SO; Aksoy BA; Babur Ö; Demir E
PLoS One; 2015; 10(6):e0128985. PubMed ID: 26030594
[TBL] [Abstract][Full Text] [Related]
4. SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.
Balci H; Dogrusoz U; Ozgul YZ; Atayev P
PLoS Comput Biol; 2022 Nov; 18(11):e1010635. PubMed ID: 36374853
[TBL] [Abstract][Full Text] [Related]
5. PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization.
Dogrusoz U; Erson EZ; Giral E; Demir E; Babur O; Cetintas A; Colak R
Bioinformatics; 2006 Feb; 22(3):374-5. PubMed ID: 16287939
[TBL] [Abstract][Full Text] [Related]
6. cPath: open source software for collecting, storing, and querying biological pathways.
Cerami EG; Bader GD; Gross BE; Sander C
BMC Bioinformatics; 2006 Nov; 7():497. PubMed ID: 17101041
[TBL] [Abstract][Full Text] [Related]
7. An editor for pathway drawing and data visualization in the Biopathways Workbench.
Byrnes RW; Cotter D; Maer A; Li J; Nadeau D; Subramaniam S
BMC Syst Biol; 2009 Oct; 3():99. PubMed ID: 19799790
[TBL] [Abstract][Full Text] [Related]
8. Systems biology graphical notation markup language (SBGNML) version 0.3.
Bergmann FT; Czauderna T; Dogrusoz U; Rougny A; Dräger A; Touré V; Mazein A; Blinov ML; Luna A
J Integr Bioinform; 2020 Jun; 17(2-3):. PubMed ID: 32568733
[TBL] [Abstract][Full Text] [Related]
9. PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.
Demir E; Babur O; Dogrusoz U; Gursoy A; Nisanci G; Cetin-Atalay R; Ozturk M
Bioinformatics; 2002 Jul; 18(7):996-1003. PubMed ID: 12117798
[TBL] [Abstract][Full Text] [Related]
10. rBiopaxParser--an R package to parse, modify and visualize BioPAX data.
Kramer F; Bayerlová M; Klemm F; Bleckmann A; Beissbarth T
Bioinformatics; 2013 Feb; 29(4):520-2. PubMed ID: 23274212
[TBL] [Abstract][Full Text] [Related]
11. Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation.
Junker A; Rohn H; Czauderna T; Klukas C; Hartmann A; Schreiber F
Nat Protoc; 2012 Mar; 7(3):579-93. PubMed ID: 22383037
[TBL] [Abstract][Full Text] [Related]
12. KEGG-based pathway visualization tool for complex omics data.
Arakawa K; Kono N; Yamada Y; Mori H; Tomita M
In Silico Biol; 2005; 5(4):419-23. PubMed ID: 16268787
[TBL] [Abstract][Full Text] [Related]
13. Biographer: web-based editing and rendering of SBGN compliant biochemical networks.
Krause F; Schulz M; Ripkens B; Flöttmann M; Krantz M; Klipp E; Handorf T
Bioinformatics; 2013 Jun; 29(11):1467-8. PubMed ID: 23574737
[TBL] [Abstract][Full Text] [Related]
14. Integrating biological pathways and genomic profiles with ChiBE 2.
Babur Ö; Dogrusoz U; Çakır M; Aksoy BA; Schultz N; Sander C; Demir E
BMC Genomics; 2014 Aug; 15(1):642. PubMed ID: 25086704
[TBL] [Abstract][Full Text] [Related]
15. Conversion of KEGG metabolic pathways to SBGN maps including automatic layout.
Czauderna T; Wybrow M; Marriott K; Schreiber F
BMC Bioinformatics; 2013 Aug; 14():250. PubMed ID: 23953132
[TBL] [Abstract][Full Text] [Related]
16. VisANT: data-integrating visual framework for biological networks and modules.
Hu Z; Mellor J; Wu J; Yamada T; Holloway D; Delisi C
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W352-7. PubMed ID: 15980487
[TBL] [Abstract][Full Text] [Related]
17. Reactome: a database of reactions, pathways and biological processes.
Croft D; O'Kelly G; Wu G; Haw R; Gillespie M; Matthews L; Caudy M; Garapati P; Gopinath G; Jassal B; Jupe S; Kalatskaya I; Mahajan S; May B; Ndegwa N; Schmidt E; Shamovsky V; Yung C; Birney E; Hermjakob H; D'Eustachio P; Stein L
Nucleic Acids Res; 2011 Jan; 39(Database issue):D691-7. PubMed ID: 21067998
[TBL] [Abstract][Full Text] [Related]
18. Biochemical modeling with Systems Biology Graphical Notation.
Jansson A; Jirstrand M
Drug Discov Today; 2010 May; 15(9-10):365-70. PubMed ID: 20211756
[TBL] [Abstract][Full Text] [Related]
19. Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.
Turinsky AL; Ah-Seng AC; Gordon PM; Stromer JN; Taschuk ML; Xu EW; Sensen CW
In Silico Biol; 2005; 5(2):187-98. PubMed ID: 15972014
[TBL] [Abstract][Full Text] [Related]
20. BioPAX support in CellDesigner.
Mi H; Muruganujan A; Demir E; Matsuoka Y; Funahashi A; Kitano H; Thomas PD
Bioinformatics; 2011 Dec; 27(24):3437-8. PubMed ID: 22021903
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
