These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

181 related articles for article (PubMed ID: 20483918)

  • 21. Advances in the integration of transcriptional regulatory information into genome-scale metabolic models.
    Vivek-Ananth RP; Samal A
    Biosystems; 2016 Sep; 147():1-10. PubMed ID: 27287878
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.
    Prigent S; Frioux C; Dittami SM; Thiele S; Larhlimi A; Collet G; Gutknecht F; Got J; Eveillard D; Bourdon J; Plewniak F; Tonon T; Siegel A
    PLoS Comput Biol; 2017 Jan; 13(1):e1005276. PubMed ID: 28129330
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Flux analysis and metabolomics for systematic metabolic engineering of microorganisms.
    Toya Y; Shimizu H
    Biotechnol Adv; 2013 Nov; 31(6):818-26. PubMed ID: 23680193
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A Beginner's Guide to the COBRA Toolbox.
    Navid A
    Methods Mol Biol; 2022; 2349():339-365. PubMed ID: 34719002
    [TBL] [Abstract][Full Text] [Related]  

  • 25. FastMM: an efficient toolbox for personalized constraint-based metabolic modeling.
    Li GH; Dai S; Han F; Li W; Huang J; Xiao W
    BMC Bioinformatics; 2020 Feb; 21(1):67. PubMed ID: 32085724
    [TBL] [Abstract][Full Text] [Related]  

  • 26. R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.
    Antonov AV; Schmidt EE; Dietmann S; Krestyaninova M; Hermjakob H
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W78-83. PubMed ID: 20519200
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MetaNET--a web-accessible interactive platform for biological metabolic network analysis.
    Narang P; Khan S; Hemrom AJ; ; Lynn AM
    BMC Syst Biol; 2014; 8():130. PubMed ID: 25779921
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Using flux balance analysis to guide microbial metabolic engineering.
    Curran KA; Crook NC; Alper HS
    Methods Mol Biol; 2012; 834():197-216. PubMed ID: 22144361
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Inferring metabolic states in uncharacterized environments using gene-expression measurements.
    Rossell S; Huynen MA; Notebaart RA
    PLoS Comput Biol; 2013; 9(3):e1002988. PubMed ID: 23555222
    [TBL] [Abstract][Full Text] [Related]  

  • 30. The MONGOOSE Rational Arithmetic Toolbox.
    Le C; Chindelevitch L
    Methods Mol Biol; 2018; 1716():77-99. PubMed ID: 29222749
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Fluxer: a web application to compute, analyze and visualize genome-scale metabolic flux networks.
    Hari A; Lobo D
    Nucleic Acids Res; 2020 Jul; 48(W1):W427-W435. PubMed ID: 32442279
    [TBL] [Abstract][Full Text] [Related]  

  • 32. TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks.
    Jensen PA; Lutz KA; Papin JA
    BMC Syst Biol; 2011 Sep; 5():147. PubMed ID: 21943338
    [TBL] [Abstract][Full Text] [Related]  

  • 33. redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models.
    Ataman M; Hernandez Gardiol DF; Fengos G; Hatzimanikatis V
    PLoS Comput Biol; 2017 Jul; 13(7):e1005444. PubMed ID: 28727725
    [TBL] [Abstract][Full Text] [Related]  

  • 34. MADNet: microarray database network web server.
    Segota I; Bartonicek N; Vlahovicek K
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W332-5. PubMed ID: 18480121
    [TBL] [Abstract][Full Text] [Related]  

  • 35. FAME, the Flux Analysis and Modeling Environment.
    Boele J; Olivier BG; Teusink B
    BMC Syst Biol; 2012 Jan; 6():8. PubMed ID: 22289213
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Methods for automated genome-scale metabolic model reconstruction.
    Faria JP; Rocha M; Rocha I; Henry CS
    Biochem Soc Trans; 2018 Aug; 46(4):931-936. PubMed ID: 30065105
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A refined genome-scale reconstruction of Chlamydomonas metabolism provides a platform for systems-level analyses.
    Imam S; Schäuble S; Valenzuela J; López García de Lomana A; Carter W; Price ND; Baliga NS
    Plant J; 2015 Dec; 84(6):1239-56. PubMed ID: 26485611
    [TBL] [Abstract][Full Text] [Related]  

  • 38. OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space.
    Zhou G; Xia J
    Nucleic Acids Res; 2018 Jul; 46(W1):W514-W522. PubMed ID: 29878180
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Applications of genome-scale metabolic network model in metabolic engineering.
    Kim B; Kim WJ; Kim DI; Lee SY
    J Ind Microbiol Biotechnol; 2015 Mar; 42(3):339-48. PubMed ID: 25465049
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology.
    Karp PD; Latendresse M; Paley SM; Krummenacker M; Ong QD; Billington R; Kothari A; Weaver D; Lee T; Subhraveti P; Spaulding A; Fulcher C; Keseler IM; Caspi R
    Brief Bioinform; 2016 Sep; 17(5):877-90. PubMed ID: 26454094
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.