BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

212 related articles for article (PubMed ID: 20513802)

  • 1. Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring.
    Baker PR; Medzihradszky KF; Chalkley RJ
    Mol Cell Proteomics; 2010 Sep; 9(9):1795-803. PubMed ID: 20513802
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator.
    Wright JC; Collins MO; Yu L; Käll L; Brosch M; Choudhary JS
    Mol Cell Proteomics; 2012 Aug; 11(8):478-91. PubMed ID: 22493177
    [TBL] [Abstract][Full Text] [Related]  

  • 3. High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.
    Madsen JA; Xu H; Robinson MR; Horton AP; Shaw JB; Giles DK; Kaoud TS; Dalby KN; Trent MS; Brodbelt JS
    Mol Cell Proteomics; 2013 Sep; 12(9):2604-14. PubMed ID: 23695934
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments.
    Kandasamy K; Pandey A; Molina H
    Anal Chem; 2009 Sep; 81(17):7170-80. PubMed ID: 19639959
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra.
    Sun RX; Dong MQ; Song CQ; Chi H; Yang B; Xiu LY; Tao L; Jing ZY; Liu C; Wang LH; Fu Y; He SM
    J Proteome Res; 2010 Dec; 9(12):6354-67. PubMed ID: 20883037
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.
    Kim S; Mischerikow N; Bandeira N; Navarro JD; Wich L; Mohammed S; Heck AJ; Pevzner PA
    Mol Cell Proteomics; 2010 Dec; 9(12):2840-52. PubMed ID: 20829449
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A new probabilistic database search algorithm for ETD spectra.
    Sadygov RG; Good DM; Swaney DL; Coon JJ
    J Proteome Res; 2009 Jun; 8(6):3198-205. PubMed ID: 19354237
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparative database search engine analysis on massive tandem mass spectra of pork-based food products for halal proteomics.
    Amir SH; Yuswan MH; Aizat WM; Mansor MK; Desa MNM; Yusof YA; Song LK; Mustafa S
    J Proteomics; 2021 Jun; 241():104240. PubMed ID: 33894373
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Precursor charge state prediction for electron transfer dissociation tandem mass spectra.
    Sharma V; Eng JK; Feldman S; von Haller PD; MacCoss MJ; Noble WS
    J Proteome Res; 2010 Oct; 9(10):5438-44. PubMed ID: 20731383
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Charger: combination of signal processing and statistical learning algorithms for precursor charge-state determination from electron-transfer dissociation spectra.
    Sadygov RG; Hao Z; Huhmer AF
    Anal Chem; 2008 Jan; 80(2):376-86. PubMed ID: 18081262
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Statistical analysis of electron transfer dissociation pairwise fragmentation patterns.
    Li W; Song C; Bailey DJ; Tseng GC; Coon JJ; Wysocki VH
    Anal Chem; 2011 Dec; 83(24):9540-5. PubMed ID: 22022956
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FPTMS: Frequency-based approach to identify the peptide from the low-energy collision-induced dissociation tandem mass spectra.
    Ramachandran S; Thomas T
    J Proteomics; 2021 Mar; 235():104116. PubMed ID: 33453436
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Post-acquisition ETD spectral processing for increased peptide identifications.
    Good DM; Wenger CD; McAlister GC; Bai DL; Hunt DF; Coon JJ
    J Am Soc Mass Spectrom; 2009 Aug; 20(8):1435-40. PubMed ID: 19362853
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins.
    Yen CY; Meyer-Arendt K; Eichelberger B; Sun S; Houel S; Old WM; Knight R; Ahn NG; Hunter LE; Resing KA
    Mol Cell Proteomics; 2009 Apr; 8(4):857-69. PubMed ID: 19106086
    [TBL] [Abstract][Full Text] [Related]  

  • 15. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
    J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets.
    Deutsch EW; Shteynberg D; Lam H; Sun Z; Eng JK; Carapito C; von Haller PD; Tasman N; Mendoza L; Farrah T; Aebersold R
    Proteomics; 2010 Mar; 10(6):1190-5. PubMed ID: 20082347
    [TBL] [Abstract][Full Text] [Related]  

  • 17. On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications.
    Wu SL; Hühmer AF; Hao Z; Karger BL
    J Proteome Res; 2007 Nov; 6(11):4230-44. PubMed ID: 17900180
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL).
    Koehler CJ; Arntzen MØ; Treumann A; Thiede B
    Anal Bioanal Chem; 2012 Sep; 404(4):1103-14. PubMed ID: 22460078
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Tailoring to Search Engines: Bottom-Up Proteomics with Collision Energies Optimized for Identification Confidence.
    Révész Á; Milley MG; Nagy K; Szabó D; Kalló G; Csősz É; Vékey K; Drahos L
    J Proteome Res; 2021 Jan; 20(1):474-484. PubMed ID: 33284634
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.
    Leinenbach A; Hartmer R; Lubeck M; Kneissl B; Elnakady YA; Baessmann C; Müller R; Huber CG
    J Proteome Res; 2009 Sep; 8(9):4350-61. PubMed ID: 19634914
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.