These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

259 related articles for article (PubMed ID: 20519285)

  • 1. A computational genomics pipeline for prokaryotic sequencing projects.
    Kislyuk AO; Katz LS; Agrawal S; Hagen MS; Conley AB; Jayaraman P; Nelakuditi V; Humphrey JC; Sammons SA; Govil D; Mair RD; Tatti KM; Tondella ML; Harcourt BH; Mayer LW; Jordan IK
    Bioinformatics; 2010 Aug; 26(15):1819-26. PubMed ID: 20519285
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies.
    Thakur S; Guttman DS
    BMC Bioinformatics; 2016 Jun; 17(1):260. PubMed ID: 27363390
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Robust high-throughput prokaryote
    Page AJ; De Silva N; Hunt M; Quail MA; Parkhill J; Harris SR; Otto TD; Keane JA
    Microb Genom; 2016 Aug; 2(8):e000083. PubMed ID: 28348874
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Neisseria Base: a comparative genomics database for Neisseria meningitidis.
    Katz LS; Humphrey JC; Conley AB; Nelakuditi V; Kislyuk AO; Agrawal S; Jayaraman P; Harcourt BH; Olsen-Rasmussen MA; Frace M; Sharma NV; Mayer LW; Jordan IK
    Database (Oxford); 2011; 2011():bar035. PubMed ID: 21930505
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.
    Bratcher HB; Corton C; Jolley KA; Parkhill J; Maiden MC
    BMC Genomics; 2014 Dec; 15(1):1138. PubMed ID: 25523208
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.
    Xie Z; Tang H
    Bioinformatics; 2017 Nov; 33(21):3340-3347. PubMed ID: 29077810
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
    Tanizawa Y; Fujisawa T; Nakamura Y
    Bioinformatics; 2018 Mar; 34(6):1037-1039. PubMed ID: 29106469
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Prokka: rapid prokaryotic genome annotation.
    Seemann T
    Bioinformatics; 2014 Jul; 30(14):2068-9. PubMed ID: 24642063
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.
    Nagasaki H; Mochizuki T; Kodama Y; Saruhashi S; Morizaki S; Sugawara H; Ohyanagi H; Kurata N; Okubo K; Takagi T; Kaminuma E; Nakamura Y
    DNA Res; 2013 Aug; 20(4):383-90. PubMed ID: 23657089
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.
    Coil D; Jospin G; Darling AE
    Bioinformatics; 2015 Feb; 31(4):587-9. PubMed ID: 25338718
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using KBase to Assemble and Annotate Prokaryotic Genomes.
    Allen B; Drake M; Harris N; Sullivan T
    Curr Protoc Microbiol; 2017 Aug; 46():1E.13.1-1E.13.18. PubMed ID: 28800158
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations.
    Tovchigrechko A; Venepally P; Payne SH
    Bioinformatics; 2014 May; 30(10):1469-70. PubMed ID: 24470574
    [TBL] [Abstract][Full Text] [Related]  

  • 13. JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.
    Latorre M; Silva H; Saba J; Guziolowski C; Vizoso P; Martinez V; Maldonado J; Morales A; Caroca R; Cambiazo V; Campos-Vargas R; Gonzalez M; Orellana A; Retamales J; Meisel LA
    BMC Bioinformatics; 2006 Nov; 7():513. PubMed ID: 17123449
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DIYA: a bacterial annotation pipeline for any genomics lab.
    Stewart AC; Osborne B; Read TD
    Bioinformatics; 2009 Apr; 25(7):962-3. PubMed ID: 19254921
    [TBL] [Abstract][Full Text] [Related]  

  • 15. EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes.
    Sallet E; Gouzy J; Schiex T
    Bioinformatics; 2014 Sep; 30(18):2659-61. PubMed ID: 24880686
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genix: a new online automated pipeline for bacterial genome annotation.
    Kremer FS; Eslabão MR; Dellagostin OA; Pinto LD
    FEMS Microbiol Lett; 2016 Dec; 363(23):. PubMed ID: 27856568
    [TBL] [Abstract][Full Text] [Related]  

  • 17. REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
    Linke B; McHardy AC; Neuweger H; Krause L; Meyer F
    Appl Bioinformatics; 2006; 5(3):193-8. PubMed ID: 16922601
    [TBL] [Abstract][Full Text] [Related]  

  • 18. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
    Han BW; Wang W; Zamore PD; Weng Z
    Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Balrog: A universal protein model for prokaryotic gene prediction.
    Sommer MJ; Salzberg SL
    PLoS Comput Biol; 2021 Feb; 17(2):e1008727. PubMed ID: 33635857
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 13.