These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 20525384)

  • 41. A probabilistic model of RNA conformational space.
    Frellsen J; Moltke I; Thiim M; Mardia KV; Ferkinghoff-Borg J; Hamelryck T
    PLoS Comput Biol; 2009 Jun; 5(6):e1000406. PubMed ID: 19543381
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure.
    Mendes J; Nagarajaram HA; Soares CM; Blundell TL; Carrondo MA
    Biopolymers; 2001 Aug; 59(2):72-86. PubMed ID: 11373721
    [TBL] [Abstract][Full Text] [Related]  

  • 43. New Dynamic Rotamer Libraries: Data-Driven Analysis of Side-Chain Conformational Propensities.
    Towse CL; Rysavy SJ; Vulovic IM; Daggett V
    Structure; 2016 Jan; 24(1):187-199. PubMed ID: 26745530
    [TBL] [Abstract][Full Text] [Related]  

  • 44. A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions.
    Shapovalov MV; Dunbrack RL
    Structure; 2011 Jun; 19(6):844-58. PubMed ID: 21645855
    [TBL] [Abstract][Full Text] [Related]  

  • 45. An Algorithm for Computing Side Chain Conformational Variations of a Protein Tunnel/Channel.
    Seo U; Kim KJ; Kang BS
    Molecules; 2018 Sep; 23(10):. PubMed ID: 30261587
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.
    Schrauber H; Eisenhaber F; Argos P
    J Mol Biol; 1993 Mar; 230(2):592-612. PubMed ID: 8464066
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Using quantum mechanics to improve estimates of amino acid side chain rotamer energies.
    Renfrew PD; Butterfoss GL; Kuhlman B
    Proteins; 2008 Jun; 71(4):1637-46. PubMed ID: 18076032
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation.
    Cao Y; Song L; Miao Z; Hu Y; Tian L; Jiang T
    Bioinformatics; 2011 Mar; 27(6):785-90. PubMed ID: 21216772
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Excluded volume in protein side-chain packing.
    Kussell E; Shimada J; Shakhnovich EI
    J Mol Biol; 2001 Aug; 311(1):183-93. PubMed ID: 11469867
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Correlation analysis of the side-chains conformational distribution in bound and unbound proteins.
    Kirys T; Ruvinsky AM; Tuzikov AV; Vakser IA
    BMC Bioinformatics; 2012 Sep; 13():236. PubMed ID: 22984947
    [TBL] [Abstract][Full Text] [Related]  

  • 51. An adaptive dynamic programming algorithm for the side chain placement problem.
    Leaver-Fay A; Kuhlman B; Snoeyink J
    Pac Symp Biocomput; 2005; ():16-27. PubMed ID: 15759610
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Molprobity's ultimate rotamer-library distributions for model validation.
    Hintze BJ; Lewis SM; Richardson JS; Richardson DC
    Proteins; 2016 Sep; 84(9):1177-89. PubMed ID: 27018641
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Free energies of amino acid side-chain rotamers in alpha-helices, beta-sheets and alpha-helix N-caps.
    Stapley BJ; Doig AJ
    J Mol Biol; 1997 Sep; 272(3):456-64. PubMed ID: 9325103
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
    Gautier R; Tufféry P
    J Comput Chem; 2003 Nov; 24(15):1950-61. PubMed ID: 14515377
    [TBL] [Abstract][Full Text] [Related]  

  • 55. The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem.
    Lasters I; Desmet J
    Protein Eng; 1993 Sep; 6(7):717-22. PubMed ID: 8248095
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Comparing bound and unbound protein structures using energy calculation and rotamer statistics.
    Koch K; Zöllner F; Neumann S; Kummert F; Sagerer G
    In Silico Biol; 2002; 2(3):351-68. PubMed ID: 12542419
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool.
    Bower MJ; Cohen FE; Dunbrack RL
    J Mol Biol; 1997 Apr; 267(5):1268-82. PubMed ID: 9150411
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 59. A graph-theory algorithm for rapid protein side-chain prediction.
    Canutescu AA; Shelenkov AA; Dunbrack RL
    Protein Sci; 2003 Sep; 12(9):2001-14. PubMed ID: 12930999
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Building protein structure-specific rotamer libraries.
    Grybauskas A; Gražulis S
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37439702
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.