342 related articles for article (PubMed ID: 20525618)
1. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework.
Bloomquist EW; Suchard MA
Syst Biol; 2010 Jan; 59(1):27-41. PubMed ID: 20525618
[TBL] [Abstract][Full Text] [Related]
2. On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.
Rabier CE; Berry V; Stoltz M; Santos JD; Wang W; Glaszmann JC; Pardi F; Scornavacca C
PLoS Comput Biol; 2021 Sep; 17(9):e1008380. PubMed ID: 34478440
[TBL] [Abstract][Full Text] [Related]
3. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
4. Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.
Wen D; Yu Y; Nakhleh L
PLoS Genet; 2016 May; 12(5):e1006006. PubMed ID: 27144273
[TBL] [Abstract][Full Text] [Related]
5. Bayesian inference of phylogeny and its impact on evolutionary biology.
Huelsenbeck JP; Ronquist F; Nielsen R; Bollback JP
Science; 2001 Dec; 294(5550):2310-4. PubMed ID: 11743192
[TBL] [Abstract][Full Text] [Related]
6. The NET-HMM approach: phylogenetic network inference by combining maximum likelihood and Hidden Markov Models.
Snir S; Tuller T
J Bioinform Comput Biol; 2009 Aug; 7(4):625-44. PubMed ID: 19634195
[TBL] [Abstract][Full Text] [Related]
7. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.
Pagel M; Meade A
Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):3955-64. PubMed ID: 18852097
[TBL] [Abstract][Full Text] [Related]
8. Guided tree topology proposals for Bayesian phylogenetic inference.
Höhna S; Drummond AJ
Syst Biol; 2012 Jan; 61(1):1-11. PubMed ID: 21828081
[TBL] [Abstract][Full Text] [Related]
9. Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
Huelsenbeck JP; Larget B; Alfaro ME
Mol Biol Evol; 2004 Jun; 21(6):1123-33. PubMed ID: 15034130
[TBL] [Abstract][Full Text] [Related]
10. Bayesian estimation of ancestral character states on phylogenies.
Pagel M; Meade A; Barker D
Syst Biol; 2004 Oct; 53(5):673-84. PubMed ID: 15545248
[TBL] [Abstract][Full Text] [Related]
11. Bayesian inference of ancestral recombination graphs.
Mahmoudi A; Koskela J; Kelleher J; Chan YB; Balding D
PLoS Comput Biol; 2022 Mar; 18(3):e1009960. PubMed ID: 35263345
[TBL] [Abstract][Full Text] [Related]
12. An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees.
Aberer AJ; Stamatakis A; Ronquist F
Syst Biol; 2016 Jan; 65(1):161-76. PubMed ID: 26231183
[TBL] [Abstract][Full Text] [Related]
13. Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
Altekar G; Dwarkadas S; Huelsenbeck JP; Ronquist F
Bioinformatics; 2004 Feb; 20(3):407-15. PubMed ID: 14960467
[TBL] [Abstract][Full Text] [Related]
14. Site-specific evolutionary rate inference: taking phylogenetic uncertainty into account.
Mayrose I; Mitchell A; Pupko T
J Mol Evol; 2005 Mar; 60(3):345-53. PubMed ID: 15871045
[TBL] [Abstract][Full Text] [Related]
15. Topology of viral evolution.
Chan JM; Carlsson G; Rabadan R
Proc Natl Acad Sci U S A; 2013 Nov; 110(46):18566-71. PubMed ID: 24170857
[TBL] [Abstract][Full Text] [Related]
16. Generalized mixture models for molecular phylogenetic estimation.
Evans J; Sullivan J
Syst Biol; 2012 Jan; 61(1):12-21. PubMed ID: 21873377
[TBL] [Abstract][Full Text] [Related]
17. The Promise of Inferring the Past Using the Ancestral Recombination Graph.
Brandt DYC; Huber CD; Chiang CWK; Ortega-Del Vecchyo D
Genome Biol Evol; 2024 Feb; 16(2):. PubMed ID: 38242694
[TBL] [Abstract][Full Text] [Related]
18. An Annealed Sequential Monte Carlo Method for Bayesian Phylogenetics.
Wang L; Wang S; Bouchard-Côté A
Syst Biol; 2020 Jan; 69(1):155-183. PubMed ID: 31173141
[TBL] [Abstract][Full Text] [Related]
19. Phylogenetic MCMC algorithms are misleading on mixtures of trees.
Mossel E; Vigoda E
Science; 2005 Sep; 309(5744):2207-9. PubMed ID: 16195459
[TBL] [Abstract][Full Text] [Related]
20. Bayesian inference of phylogenetic networks from bi-allelic genetic markers.
Zhu J; Wen D; Yu Y; Meudt HM; Nakhleh L
PLoS Comput Biol; 2018 Jan; 14(1):e1005932. PubMed ID: 29320496
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
