164 related articles for article (PubMed ID: 20529894)
1. Robust unmixing of tumor states in array comparative genomic hybridization data.
Tolliver D; Tsourakakis C; Subramanian A; Shackney S; Schwartz R
Bioinformatics; 2010 Jun; 26(12):i106-14. PubMed ID: 20529894
[TBL] [Abstract][Full Text] [Related]
2. Applying unmixing to gene expression data for tumor phylogeny inference.
Schwartz R; Shackney SE
BMC Bioinformatics; 2010 Jan; 11():42. PubMed ID: 20089185
[TBL] [Abstract][Full Text] [Related]
3. Inference of tumor phylogenies from genomic assays on heterogeneous samples.
Subramanian A; Shackney S; Schwartz R
J Biomed Biotechnol; 2012; 2012():797812. PubMed ID: 22654484
[TBL] [Abstract][Full Text] [Related]
4. Smoothing waves in array CGH tumor profiles.
van de Wiel MA; Brosens R; Eilers PH; Kumps C; Meijer GA; Menten B; Sistermans E; Speleman F; Timmerman ME; Ylstra B
Bioinformatics; 2009 May; 25(9):1099-104. PubMed ID: 19276148
[TBL] [Abstract][Full Text] [Related]
5. A simplicial complex-based approach to unmixing tumor progression data.
Roman T; Nayyeri A; Fasy BT; Schwartz R
BMC Bioinformatics; 2015 Aug; 16():254. PubMed ID: 26264682
[TBL] [Abstract][Full Text] [Related]
6. Waved aCGH: to smooth or not to smooth.
LeprĂȘtre F; Villenet C; Quief S; Nibourel O; Jacquemin C; Troussard X; Jardin F; Gibson F; Kerckaert JP; Roumier C; Figeac M
Nucleic Acids Res; 2010 Apr; 38(7):e94. PubMed ID: 20071741
[TBL] [Abstract][Full Text] [Related]
7. Challenges in array comparative genomic hybridization for the analysis of cancer samples.
Nowak NJ; Miecznikowski J; Moore SR; Gaile D; Bobadilla D; Smith DD; Kernstine K; Forman SJ; Mhawech-Fauceglia P; Reid M; Stoler D; Loree T; Rigual N; Sullivan M; Weiss LM; Hicks D; Slovak ML
Genet Med; 2007 Sep; 9(9):585-95. PubMed ID: 17873646
[TBL] [Abstract][Full Text] [Related]
8. CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations.
van Houte BP; Binsl TW; Hettling H; Pirovano W; Heringa J
BMC Genomics; 2009 Aug; 10():401. PubMed ID: 19709427
[TBL] [Abstract][Full Text] [Related]
9. Medoidshift clustering applied to genomic bulk tumor data.
Roman T; Xie L; Schwartz R
BMC Genomics; 2016 Jan; 17 Suppl 1(Suppl 1):6. PubMed ID: 26817708
[TBL] [Abstract][Full Text] [Related]
10. Aneuploidy prediction and tumor classification with heterogeneous hidden conditional random fields.
Barutcuoglu Z; Airoldi EM; Dumeaux V; Schapire RE; Troyanskaya OG
Bioinformatics; 2009 May; 25(10):1307-13. PubMed ID: 19052061
[TBL] [Abstract][Full Text] [Related]
11. A very fast and accurate method for calling aberrations in array-CGH data.
Benelli M; Marseglia G; Nannetti G; Paravidino R; Zara F; Bricarelli FD; Torricelli F; Magi A
Biostatistics; 2010 Jul; 11(3):515-8. PubMed ID: 20207682
[TBL] [Abstract][Full Text] [Related]
12. Stationary wavelet packet transform and dependent laplacian bivariate shrinkage estimator for array-CGH data smoothing.
Nguyen N; Huang H; Oraintara S; Vo A
J Comput Biol; 2010 Feb; 17(2):139-52. PubMed ID: 20078226
[TBL] [Abstract][Full Text] [Related]
13. A Systems Biology Interpretation of Array Comparative Genomic Hybridization (aCGH) Data through Phylogenetics.
Abunimer AN; Salazar J; Noursi DP; Abu-Asab MS
OMICS; 2016 Mar; 20(3):169-79. PubMed ID: 26983023
[TBL] [Abstract][Full Text] [Related]
14. Estimation of tumor heterogeneity using CGH array data.
Wang K; Li J; Li S; Bolund L; Wiuf C
BMC Bioinformatics; 2009 Jan; 10():12. PubMed ID: 19134174
[TBL] [Abstract][Full Text] [Related]
15. Algorithms for calling gains and losses in array CGH data.
Wang P
Methods Mol Biol; 2009; 556():99-116. PubMed ID: 19488874
[TBL] [Abstract][Full Text] [Related]
16. Robust smooth segmentation approach for array CGH data analysis.
Huang J; Gusnanto A; O'Sullivan K; Staaf J; Borg A; Pawitan Y
Bioinformatics; 2007 Sep; 23(18):2463-9. PubMed ID: 17660206
[TBL] [Abstract][Full Text] [Related]
17. Model-based clustering of array CGH data.
Shah SP; Cheung KJ; Johnson NA; Alain G; Gascoyne RD; Horsman DE; Ng RT; Murphy KP
Bioinformatics; 2009 Jun; 25(12):i30-8. PubMed ID: 19478003
[TBL] [Abstract][Full Text] [Related]
18. LSAMP, a novel candidate tumor suppressor gene in human osteosarcomas, identified by array comparative genomic hybridization.
Kresse SH; Ohnstad HO; Paulsen EB; Bjerkehagen B; Szuhai K; Serra M; Schaefer KL; Myklebost O; Meza-Zepeda LA
Genes Chromosomes Cancer; 2009 Aug; 48(8):679-93. PubMed ID: 19441093
[TBL] [Abstract][Full Text] [Related]
19. High-Resolution Genomic Profiling of Disseminated Tumor Cells in Prostate Cancer.
Wu Y; Schoenborn JR; Morrissey C; Xia J; Larson S; Brown LG; Qu X; Lange PH; Nelson PS; Vessella RL; Fang M
J Mol Diagn; 2016 Jan; 18(1):131-43. PubMed ID: 26607774
[TBL] [Abstract][Full Text] [Related]
20. Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays.
Auer H; Newsom DL; Nowak NJ; McHugh KM; Singh S; Yu CY; Yang Y; Wenger GD; Gastier-Foster JM; Kornacker K
BMC Genomics; 2007 Apr; 8():111. PubMed ID: 17470268
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]