BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

259 related articles for article (PubMed ID: 20529927)

  • 1. Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.
    Hormozdiari F; Hajirasouliha I; Dao P; Hach F; Yorukoglu D; Alkan C; Eichler EE; Sahinalp SC
    Bioinformatics; 2010 Jun; 26(12):i350-7. PubMed ID: 20529927
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data.
    Escaramís G; Tornador C; Bassaganyas L; Rabionet R; Tubio JM; Martínez-Fundichely A; Cáceres M; Gut M; Ossowski S; Estivill X
    PLoS One; 2013; 8(5):e63377. PubMed ID: 23704902
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.
    Hajirasouliha I; Hormozdiari F; Alkan C; Kidd JM; Birol I; Eichler EE; Sahinalp SC
    Bioinformatics; 2010 May; 26(10):1277-83. PubMed ID: 20385726
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A benchmark and an algorithm for detecting germline transposon insertions and measuring de novo transposon insertion frequencies.
    Yu T; Huang X; Dou S; Tang X; Luo S; Theurkauf WE; Lu J; Weng Z
    Nucleic Acids Res; 2021 May; 49(8):e44. PubMed ID: 33511407
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
    Soylev A; Le TM; Amini H; Alkan C; Hormozdiari F
    Bioinformatics; 2019 Oct; 35(20):3923-3930. PubMed ID: 30937433
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mobile elements create structural variation: analysis of a complete human genome.
    Xing J; Zhang Y; Han K; Salem AH; Sen SK; Huff CD; Zhou Q; Kirkness EF; Levy S; Batzer MA; Jorde LB
    Genome Res; 2009 Sep; 19(9):1516-26. PubMed ID: 19439515
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data.
    Jiang C; Chen C; Huang Z; Liu R; Verdier J
    BMC Bioinformatics; 2015 Mar; 16(1):72. PubMed ID: 25887332
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution.
    Hénaff E; Zapata L; Casacuberta JM; Ossowski S
    BMC Genomics; 2015 Oct; 16():768. PubMed ID: 26459856
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TEMP: a computational method for analyzing transposable element polymorphism in populations.
    Zhuang J; Wang J; Theurkauf W; Weng Z
    Nucleic Acids Res; 2014 Jun; 42(11):6826-38. PubMed ID: 24753423
    [TBL] [Abstract][Full Text] [Related]  

  • 10. HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies.
    Fan X; Chaisson M; Nakhleh L; Chen K
    Genome Res; 2017 May; 27(5):793-800. PubMed ID: 28104618
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Discovery of large genomic inversions using long range information.
    Eslami Rasekh M; Chiatante G; Miroballo M; Tang J; Ventura M; Amemiya CT; Eichler EE; Antonacci F; Alkan C
    BMC Genomics; 2017 Jan; 18(1):65. PubMed ID: 28073353
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
    Jiang Y; Wang Y; Brudno M
    Bioinformatics; 2012 Oct; 28(20):2576-83. PubMed ID: 22851530
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.
    Quinlan AR; Clark RA; Sokolova S; Leibowitz ML; Zhang Y; Hurles ME; Mell JC; Hall IM
    Genome Res; 2010 May; 20(5):623-35. PubMed ID: 20308636
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes.
    Hormozdiari F; Alkan C; Eichler EE; Sahinalp SC
    Genome Res; 2009 Jul; 19(7):1270-8. PubMed ID: 19447966
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Long-Read Based Novel Sequence Insertion Detection With rCANID.
    Jiang T; Fu Y; Liu B; Wang Y
    IEEE Trans Nanobioscience; 2019 Jul; 18(3):343-352. PubMed ID: 30946672
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computational methods for discovering structural variation with next-generation sequencing.
    Medvedev P; Stanciu M; Brudno M
    Nat Methods; 2009 Nov; 6(11 Suppl):S13-20. PubMed ID: 19844226
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.
    Chen K; Wallis JW; McLellan MD; Larson DE; Kalicki JM; Pohl CS; McGrath SD; Wendl MC; Zhang Q; Locke DP; Shi X; Fulton RS; Ley TJ; Wilson RK; Ding L; Mardis ER
    Nat Methods; 2009 Sep; 6(9):677-81. PubMed ID: 19668202
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.
    Mohiyuddin M; Mu JC; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY
    Bioinformatics; 2015 Aug; 31(16):2741-4. PubMed ID: 25861968
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Detecting inherited and novel structural variants in low-coverage parent-child sequencing data.
    Spence M; Banuelos M; Marcia RF; Sindi S
    Methods; 2020 Feb; 173():61-68. PubMed ID: 31271880
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Characterization of structural variants with single molecule and hybrid sequencing approaches.
    Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
    Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.