91 related articles for article (PubMed ID: 20537955)
1. The challenge of annotating protein sequences: The tale of eight domains of unknown function in Pfam.
Goonesekere NC; Shipely K; O'Connor K
Comput Biol Chem; 2010 Jun; 34(3):210-4. PubMed ID: 20537955
[TBL] [Abstract][Full Text] [Related]
2. De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods.
Mudgal R; Sandhya S; Chandra N; Srinivasan N
Biol Direct; 2015 Jul; 10():38. PubMed ID: 26228684
[TBL] [Abstract][Full Text] [Related]
3. Comprehensive analysis of orthologous protein domains using the HOPS database.
Storm CE; Sonnhammer EL
Genome Res; 2003 Oct; 13(10):2353-62. PubMed ID: 14525933
[TBL] [Abstract][Full Text] [Related]
4. EVEREST: a collection of evolutionary conserved protein domains.
Portugaly E; Linial N; Linial M
Nucleic Acids Res; 2007 Jan; 35(Database issue):D241-6. PubMed ID: 17099230
[TBL] [Abstract][Full Text] [Related]
5. Domain-based small molecule binding site annotation.
Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
[TBL] [Abstract][Full Text] [Related]
6. SCOPEC: a database of protein catalytic domains.
George RA; Spriggs RV; Thornton JM; Al-Lazikani B; Swindells MB
Bioinformatics; 2004 Aug; 20 Suppl 1():i130-6. PubMed ID: 15262791
[TBL] [Abstract][Full Text] [Related]
7. Automatic annotation of protein function based on family identification.
Abascal F; Valencia A
Proteins; 2003 Nov; 53(3):683-92. PubMed ID: 14579359
[TBL] [Abstract][Full Text] [Related]
8. CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database.
Park BH; Karpinets TV; Syed MH; Leuze MR; Uberbacher EC
Glycobiology; 2010 Dec; 20(12):1574-84. PubMed ID: 20696711
[TBL] [Abstract][Full Text] [Related]
9. Molecular and structural basis of drift in the functions of closely-related homologous enzyme domains: implications for function annotation based on homology searches and structural genomics.
Roy A; Srinivasan N; Gowri VS
In Silico Biol; 2009; 9(1-2):S41-55. PubMed ID: 19537164
[TBL] [Abstract][Full Text] [Related]
10. Accurate domain identification with structure-anchored hidden Markov models, saHMMs.
Tångrot JE; Kågström B; Sauer UH
Proteins; 2009 Aug; 76(2):343-52. PubMed ID: 19173309
[TBL] [Abstract][Full Text] [Related]
11. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
12. SUPFAM: a database of sequence superfamilies of protein domains.
Pandit SB; Bhadra R; Gowri VS; Balaji S; Anand B; Srinivasan N
BMC Bioinformatics; 2004 Mar; 5():28. PubMed ID: 15113407
[TBL] [Abstract][Full Text] [Related]
13. EyeSite: a semi-automated database of protein families in the eye.
Lee DA; Fefeu S; Edo-Ukeh AA; Orengo CA; Slingsby C
Nucleic Acids Res; 2004 Jan; 32(Database issue):D148-52. PubMed ID: 14681381
[TBL] [Abstract][Full Text] [Related]
14. Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily.
Wrabl JO; Grishin NV
J Mol Biol; 2001 Nov; 314(3):365-74. PubMed ID: 11846551
[TBL] [Abstract][Full Text] [Related]
15. Ab initio modeling led annotation suggests nucleic acid binding function for many DUFs.
Rigden DJ
OMICS; 2011; 15(7-8):431-8. PubMed ID: 21348639
[TBL] [Abstract][Full Text] [Related]
16. Searching for hypothetical proteins: theory and practice based upon original data and literature.
Lubec G; Afjehi-Sadat L; Yang JW; John JP
Prog Neurobiol; 2005; 77(1-2):90-127. PubMed ID: 16271823
[TBL] [Abstract][Full Text] [Related]
17. Pairwise sequence alignment below the twilight zone.
Blake JD; Cohen FE
J Mol Biol; 2001 Mar; 307(2):721-35. PubMed ID: 11254392
[TBL] [Abstract][Full Text] [Related]
18. The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis.
Bartoli L; Montanucci L; Fronza R; Martelli PL; Fariselli P; Carota L; Donvito G; Maggi GP; Casadio R
J Proteome Res; 2009 Sep; 8(9):4362-71. PubMed ID: 19552451
[TBL] [Abstract][Full Text] [Related]
19. Clustering the annotation space of proteins.
Kunin V; Ouzounis CA
BMC Bioinformatics; 2005 Feb; 6():24. PubMed ID: 15703069
[TBL] [Abstract][Full Text] [Related]
20. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application.
Stevens FJ; Kuemmel C; Babnigg G; Collart FR
J Mol Recognit; 2005; 18(2):150-7. PubMed ID: 15593246
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]