BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 20546630)

  • 1. Pripper: prediction of caspase cleavage sites from whole proteomes.
    Piippo M; Lietzén N; Nevalainen OS; Salmi J; Nyman TA
    BMC Bioinformatics; 2010 Jun; 11():320. PubMed ID: 20546630
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Cascleave: towards more accurate prediction of caspase substrate cleavage sites.
    Song J; Tan H; Shen H; Mahmood K; Boyd SE; Webb GI; Akutsu T; Whisstock JC
    Bioinformatics; 2010 Mar; 26(6):752-60. PubMed ID: 20130033
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A multi-factor model for caspase degradome prediction.
    Wee LJ; Tong JC; Tan TW; Ranganathan S
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S6. PubMed ID: 19958504
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets.
    Wang M; Zhao XM; Tan H; Akutsu T; Whisstock JC; Song J
    Bioinformatics; 2014 Jan; 30(1):71-80. PubMed ID: 24149049
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates.
    Kumar S; van Raam BJ; Salvesen GS; Cieplak P
    PLoS One; 2014; 9(10):e110539. PubMed ID: 25330111
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CaSPredictor: a new computer-based tool for caspase substrate prediction.
    Garay-Malpartida HM; Occhiucci JM; Alves J; Belizário JE
    Bioinformatics; 2005 Jun; 21 Suppl 1():i169-76. PubMed ID: 15961454
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CASVM: web server for SVM-based prediction of caspase substrates cleavage sites.
    Wee LJ; Tan TW; Ranganathan S
    Bioinformatics; 2007 Dec; 23(23):3241-3. PubMed ID: 17599937
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences.
    Backes C; Kuentzer J; Lenhof HP; Comtesse N; Meese E
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W208-13. PubMed ID: 15980455
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini.
    Mahrus S; Trinidad JC; Barkan DT; Sali A; Burlingame AL; Wells JA
    Cell; 2008 Sep; 134(5):866-76. PubMed ID: 18722006
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Developing a powerful in silico tool for the discovery of novel caspase-3 substrates: a preliminary screening of the human proteome.
    Ayyash M; Tamimi H; Ashhab Y
    BMC Bioinformatics; 2012 Jan; 13():14. PubMed ID: 22269041
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ScreenCap3: Improving prediction of caspase-3 cleavage sites using experimentally verified noncleavage sites.
    Fu SC; Imai K; Sawasaki T; Tomii K
    Proteomics; 2014 Sep; 14(17-18):2042-6. PubMed ID: 24995852
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SVM-based prediction of caspase substrate cleavage sites.
    Wee LJ; Tan TW; Ranganathan S
    BMC Bioinformatics; 2006 Dec; 7 Suppl 5(Suppl 5):S14. PubMed ID: 17254298
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Novel Apoptotic Mediators Identified by Conservation of Vertebrate Caspase Targets.
    Gubina N; Leboeuf D; Piatkov K; Pyatkov M
    Biomolecules; 2020 Apr; 10(4):. PubMed ID: 32326640
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Toward computer-based cleavage site prediction of cysteine endopeptidases.
    Lohmüller T; Wenzler D; Hagemann S; Kiess W; Peters C; Dandekar T; Reinheckel T
    Biol Chem; 2003 Jun; 384(6):899-909. PubMed ID: 12887057
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Proteomic identification of synaptic caspase substrates.
    Victor KG; Heffron DS; Sokolowski JD; Majumder U; Leblanc A; Mandell JW
    Synapse; 2018 Jan; 72(1):. PubMed ID: 28960461
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites.
    Schilling O; Overall CM
    Nat Biotechnol; 2008 Jun; 26(6):685-94. PubMed ID: 18500335
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Deep Profiling of the Cleavage Specificity and Human Substrates of Snake Venom Metalloprotease HF3 by Proteomic Identification of Cleavage Site Specificity (PICS) Using Proteome Derived Peptide Libraries and Terminal Amine Isotopic Labeling of Substrates (TAILS) N-Terminomics.
    Zelanis A; Oliveira AK; Prudova A; Huesgen PF; Tashima AK; Kizhakkedathu J; Overall CM; Serrano SMT
    J Proteome Res; 2019 Sep; 18(9):3419-3428. PubMed ID: 31337208
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Effect of phosphorylation and single nucleotide polymorphisms on caspase substrates processing.
    Kumar S; Cieplak P
    Apoptosis; 2018 Apr; 23(3-4):194-200. PubMed ID: 29453691
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Functional interplay between caspase cleavage and phosphorylation sculpts the apoptotic proteome.
    Dix MM; Simon GM; Wang C; Okerberg E; Patricelli MP; Cravatt BF
    Cell; 2012 Jul; 150(2):426-40. PubMed ID: 22817901
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites.
    Chen X; Qiu JD; Shi SP; Suo SB; Huang SY; Liang RP
    Bioinformatics; 2013 Jul; 29(13):1614-22. PubMed ID: 23626001
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.