167 related articles for article (PubMed ID: 20551135)
21. Integrative analysis of ChIP-chip and ChIP-seq dataset.
Zhu LJ
Methods Mol Biol; 2013; 1067():105-24. PubMed ID: 23975789
[TBL] [Abstract][Full Text] [Related]
22. CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data.
Cesaroni M; Cittaro D; Brozzi A; Pelicci PG; Luzi L
Bioinformatics; 2008 Dec; 24(24):2918-20. PubMed ID: 18945685
[TBL] [Abstract][Full Text] [Related]
23. Computational analysis and modeling of genome-scale avidity distribution of transcription factor binding sites in chip-pet experiments.
Kuznetsov VA; Orlov YL; Wei CL; Ruan Y
Genome Inform; 2007; 19():83-94. PubMed ID: 18546507
[TBL] [Abstract][Full Text] [Related]
24. NTAP: for NimbleGen tiling array ChIP-chip data analysis.
He K; Li X; Zhou J; Deng XW; Zhao H; Luo J
Bioinformatics; 2009 Jul; 25(14):1838-40. PubMed ID: 19468055
[TBL] [Abstract][Full Text] [Related]
25. Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.
Choi H; Nesvizhskii AI; Ghosh D; Qin ZS
Bioinformatics; 2009 Jul; 25(14):1715-21. PubMed ID: 19447789
[TBL] [Abstract][Full Text] [Related]
26. Collaborative Completion of Transcription Factor Binding Profiles via Local Sensitive Unified Embedding.
Zhu L; Guo WL; Lu C; Huang DS
IEEE Trans Nanobioscience; 2016 Dec; 15(8):946-958. PubMed ID: 27845669
[TBL] [Abstract][Full Text] [Related]
27. Analyzing ChIP-chip data using bioconductor.
Toedling J; Huber W
PLoS Comput Biol; 2008 Nov; 4(11):e1000227. PubMed ID: 19043553
[No Abstract] [Full Text] [Related]
28. An integrated software system for analyzing ChIP-chip and ChIP-seq data.
Ji H; Jiang H; Ma W; Johnson DS; Myers RM; Wong WH
Nat Biotechnol; 2008 Nov; 26(11):1293-300. PubMed ID: 18978777
[TBL] [Abstract][Full Text] [Related]
29. HAT: hypergeometric analysis of tiling-arrays with application to promoter-GeneChip data.
Taskesen E; Beekman R; de Ridder J; Wouters BJ; Peeters JK; Touw IP; Reinders MJ; Delwel R
BMC Bioinformatics; 2010 May; 11():275. PubMed ID: 20492700
[TBL] [Abstract][Full Text] [Related]
30. Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite.
Wang X; Zhang X
BMC Syst Biol; 2011; 5 Suppl 2(Suppl 2):S3. PubMed ID: 22784574
[TBL] [Abstract][Full Text] [Related]
31. Application of the simple and efficient Mpeak modeling in binding peak identification in ChIP-chip studies.
Zheng M; Li Y; Lau YF
Methods Mol Biol; 2013; 1067():185-202. PubMed ID: 23975793
[TBL] [Abstract][Full Text] [Related]
32. Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.
Zacher B; Kuan PF; Tresch A
BMC Bioinformatics; 2010 Apr; 11():194. PubMed ID: 20398407
[TBL] [Abstract][Full Text] [Related]
33. Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies.
Eeckhoute J; Lupien M; Brown M
Methods Mol Biol; 2009; 556():155-64. PubMed ID: 19488877
[TBL] [Abstract][Full Text] [Related]
34. Analysis of Protein-DNA Interaction by Chromatin Immunoprecipitation and DNA Tiling Microarray (ChIP-on-chip).
Gao H; Zhao C
Methods Mol Biol; 2018; 1689():43-51. PubMed ID: 29027163
[TBL] [Abstract][Full Text] [Related]
35. A statistical framework for power calculations in ChIP-seq experiments.
Zuo C; Keleş S
Bioinformatics; 2014 Mar; 30(6):753-60. PubMed ID: 23665773
[TBL] [Abstract][Full Text] [Related]
36. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
Liu XS; Brutlag DL; Liu JS
Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
[TBL] [Abstract][Full Text] [Related]
37. Comparative study on ChIP-seq data: normalization and binding pattern characterization.
Taslim C; Wu J; Yan P; Singer G; Parvin J; Huang T; Lin S; Huang K
Bioinformatics; 2009 Sep; 25(18):2334-40. PubMed ID: 19561022
[TBL] [Abstract][Full Text] [Related]
38. W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data.
Chen X; Guo L; Fan Z; Jiang T
Bioinformatics; 2008 May; 24(9):1121-8. PubMed ID: 18325926
[TBL] [Abstract][Full Text] [Related]
39. TileMap: create chromosomal map of tiling array hybridizations.
Ji H; Wong WH
Bioinformatics; 2005 Sep; 21(18):3629-36. PubMed ID: 16046496
[TBL] [Abstract][Full Text] [Related]
40. Model-based deconvolution of genome-wide DNA binding.
Reiss DJ; Facciotti MT; Baliga NS
Bioinformatics; 2008 Feb; 24(3):396-403. PubMed ID: 18056063
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]