These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

80 related articles for article (PubMed ID: 20556863)

  • 1. Statistical comparison of methods to estimate the error probability in short-read Illumina sequencing.
    Abnizova I; Skelly T; Naumenko F; Whiteford N; Brown C; Cox T
    J Bioinform Comput Biol; 2010 Jun; 8(3):579-91. PubMed ID: 20556863
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing.
    Clement NL; Snell Q; Clement MJ; Hollenhorst PC; Purwar J; Graves BJ; Cairns BR; Johnson WE
    Bioinformatics; 2010 Jan; 26(1):38-45. PubMed ID: 19861355
    [TBL] [Abstract][Full Text] [Related]  

  • 3. De novo sequencing of plant genomes using second-generation technologies.
    Imelfort M; Edwards D
    Brief Bioinform; 2009 Nov; 10(6):609-18. PubMed ID: 19933209
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Optimal spliced alignments of short sequence reads.
    De Bona F; Ossowski S; Schneeberger K; Rätsch G
    Bioinformatics; 2008 Aug; 24(16):i174-80. PubMed ID: 18689821
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Base-calling of automated sequencer traces using phred. II. Error probabilities.
    Ewing B; Green P
    Genome Res; 1998 Mar; 8(3):186-94. PubMed ID: 9521922
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analysis of context-dependent errors for illumina sequencing.
    Abnizova I; Leonard S; Skelly T; Brown A; Jackson D; Gourtovaia M; Qi G; Te Boekhorst R; Faruque N; Lewis K; Cox T
    J Bioinform Comput Biol; 2012 Apr; 10(2):1241005. PubMed ID: 22809341
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
    Wick RR; Judd LM; Gorrie CL; Holt KE
    PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.
    Liao P; Satten GA; Hu YJ
    Genet Epidemiol; 2017 Jul; 41(5):375-387. PubMed ID: 28560825
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Probabilistic base calling of Solexa sequencing data.
    Rougemont J; Amzallag A; Iseli C; Farinelli L; Xenarios I; Naef F
    BMC Bioinformatics; 2008 Oct; 9():431. PubMed ID: 18851737
    [TBL] [Abstract][Full Text] [Related]  

  • 11. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An overview of gene identification: approaches, strategies, and considerations.
    Baxevanis AD
    Curr Protoc Bioinformatics; 2004 Sep; Chapter 4():Unit4.1. PubMed ID: 18428724
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Algorithms for mapping short degenerate and weighted sequences to a reference genome.
    Antoniou P; Iliopoulos CS; Mouchard L; Pissis SP
    Int J Comput Biol Drug Des; 2009; 2(4):385-97. PubMed ID: 20090178
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparison of statistical significance criteria.
    Régnier M; Vandenbogaert M
    J Bioinform Comput Biol; 2006 Apr; 4(2):537-51. PubMed ID: 16819801
    [TBL] [Abstract][Full Text] [Related]  

  • 15. AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.
    Chen J; Lutsik P; Akulenko R; Walter J; Helms V
    J Bioinform Comput Biol; 2014 Dec; 12(6):1442005. PubMed ID: 25553811
    [TBL] [Abstract][Full Text] [Related]  

  • 16. TruSPAdes: barcode assembly of TruSeq synthetic long reads.
    Bankevich A; Pevzner PA
    Nat Methods; 2016 Mar; 13(3):248-50. PubMed ID: 26828418
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient algorithms and software for detection of full-length LTR retrotransposons.
    Kalyanaraman A; Aluru S
    J Bioinform Comput Biol; 2006 Apr; 4(2):197-216. PubMed ID: 16819780
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Statistical software for gene mapping by admixture linkage disequilibrium.
    Montana G; Hoggart C
    Brief Bioinform; 2007 Nov; 8(6):393-5. PubMed ID: 17640923
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly.
    Heydari M; Miclotte G; Van de Peer Y; Fostier J
    BMC Bioinformatics; 2019 Jun; 20(1):298. PubMed ID: 31159722
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PREDetector: a new tool to identify regulatory elements in bacterial genomes.
    Hiard S; Marée R; Colson S; Hoskisson PA; Titgemeyer F; van Wezel GP; Joris B; Wehenkel L; Rigali S
    Biochem Biophys Res Commun; 2007 Jun; 357(4):861-4. PubMed ID: 17451648
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.