BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 20585542)

  • 1. Using entropy maximization to understand the determinants of structural dynamics beyond native contact topology.
    Lezon TR; Bahar I
    PLoS Comput Biol; 2010 Jun; 6(6):e1000816. PubMed ID: 20585542
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Effective harmonic potentials: insights into the internal cooperativity and sequence-specificity of protein dynamics.
    Dehouck Y; Mikhailov AS
    PLoS Comput Biol; 2013; 9(8):e1003209. PubMed ID: 24009495
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Specific non-local interactions are not necessary for recovering native protein dynamics.
    Dasgupta B; Kasahara K; Kamiya N; Nakamura H; Kinjo AR
    PLoS One; 2014; 9(3):e91347. PubMed ID: 24625758
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Long-range correlation in protein dynamics: Confirmation by structural data and normal mode analysis.
    Tang QY; Kaneko K
    PLoS Comput Biol; 2020 Feb; 16(2):e1007670. PubMed ID: 32053592
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Distance matrix-based approach to protein structure prediction.
    Kloczkowski A; Jernigan RL; Wu Z; Song G; Yang L; Kolinski A; Pokarowski P
    J Struct Funct Genomics; 2009 Mar; 10(1):67-81. PubMed ID: 19224393
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein dynamics from NMR.
    Ishima R; Torchia DA
    Nat Struct Biol; 2000 Sep; 7(9):740-3. PubMed ID: 10966641
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Refinement of NMR-determined protein structures with database derived mean-force potentials.
    Wu D; Jernigan R; Wu Z
    Proteins; 2007 Jul; 68(1):232-42. PubMed ID: 17387736
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ester-linked hen egg white lysozyme shows a compact fold in a molecular dynamics simulation - possible causes and sensitivity of experimentally observable quantities to structural changes maintaining this compact fold.
    Eichenberger AP; Smith LJ; van Gunsteren WF
    FEBS J; 2012 Jan; 279(2):299-315. PubMed ID: 22093234
    [TBL] [Abstract][Full Text] [Related]  

  • 9. oGNM: online computation of structural dynamics using the Gaussian Network Model.
    Yang LW; Rader AJ; Liu X; Jursa CJ; Chen SC; Karimi HA; Bahar I
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W24-31. PubMed ID: 16845002
    [TBL] [Abstract][Full Text] [Related]  

  • 10. On the relationship between NMR-derived amide order parameters and protein backbone entropy changes.
    Sharp KA; O'Brien E; Kasinath V; Wand AJ
    Proteins; 2015 May; 83(5):922-30. PubMed ID: 25739366
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
    Kalescky R; Zhou H; Liu J; Tao P
    PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
    [TBL] [Abstract][Full Text] [Related]  

  • 12. New experimental evidence for pervasive dynamics in proteins.
    Zuiderweg ERP; Case DA
    Protein Sci; 2023 May; 32(5):e4630. PubMed ID: 36949673
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.
    Fogolari F; Tosatto SC; Colombo G
    BMC Bioinformatics; 2005 Dec; 6():301. PubMed ID: 16354298
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Elastic network normal modes provide a basis for protein structure refinement.
    Gniewek P; Kolinski A; Jernigan RL; Kloczkowski A
    J Chem Phys; 2012 May; 136(19):195101. PubMed ID: 22612113
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein elastic network models and the ranges of cooperativity.
    Yang L; Song G; Jernigan RL
    Proc Natl Acad Sci U S A; 2009 Jul; 106(30):12347-52. PubMed ID: 19617554
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions.
    Bahar I; Cheng MH; Lee JY; Kaya C; Zhang S
    Biophys J; 2015 Sep; 109(6):1101-9. PubMed ID: 26143655
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion.
    Budday D; Leyendecker S; van den Bedem H
    J Chem Inf Model; 2018 Oct; 58(10):2108-2122. PubMed ID: 30240209
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Refinement of ensembles describing unstructured proteins using NMR residual dipolar couplings.
    Esteban-Martín S; Fenwick RB; Salvatella X
    J Am Chem Soc; 2010 Apr; 132(13):4626-32. PubMed ID: 20222664
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Studying allosteric regulation in metal sensor proteins using computational methods.
    Chakravorty DK; Merz KM
    Adv Protein Chem Struct Biol; 2014; 96():181-218. PubMed ID: 25443958
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations.
    Liang S; Li L; Hsu WL; Pilcher MN; Uversky V; Zhou Y; Dunker AK; Meroueh SO
    Biochemistry; 2009 Jan; 48(2):399-414. PubMed ID: 19113835
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.