These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Khoueiry P; Rothbächer U; Ohtsuka Y; Daian F; Frangulian E; Roure A; Dubchak I; Lemaire P Curr Biol; 2010 May; 20(9):792-802. PubMed ID: 20434338 [TBL] [Abstract][Full Text] [Related]
3. Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila. Costas J; Vieira CP; Casares F; Vieira J BMC Genomics; 2003 Dec; 4(1):52. PubMed ID: 14675495 [TBL] [Abstract][Full Text] [Related]
4. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Bergman CM; Kreitman M Genome Res; 2001 Aug; 11(8):1335-45. PubMed ID: 11483574 [TBL] [Abstract][Full Text] [Related]
5. Coding DNA repeated throughout intergenic regions of the Arabidopsis thaliana genome: evolutionary footprints of RNA silencing. Feng J; Naiman DQ; Cooper B Mol Biosyst; 2009 Dec; 5(12):1679-87. PubMed ID: 19452047 [TBL] [Abstract][Full Text] [Related]
6. Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves. Berendzen KW; Stüber K; Harter K; Wanke D BMC Bioinformatics; 2006 Nov; 7():522. PubMed ID: 17137509 [TBL] [Abstract][Full Text] [Related]
10. Conserved non-genic sequences - an unexpected feature of mammalian genomes. Dermitzakis ET; Reymond A; Antonarakis SE Nat Rev Genet; 2005 Feb; 6(2):151-7. PubMed ID: 15716910 [TBL] [Abstract][Full Text] [Related]
11. Phylogeny based discovery of regulatory elements. Gertz J; Fay JC; Cohen BA BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228 [TBL] [Abstract][Full Text] [Related]
12. High density of an SAR-associated motif differentiates heterochromatin from euchromatin. Strausbaugh LD; Williams SM J Theor Biol; 1996 Nov; 183(2):159-67. PubMed ID: 8977875 [TBL] [Abstract][Full Text] [Related]
13. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Washietl S; Hofacker IL; Lukasser M; Hüttenhofer A; Stadler PF Nat Biotechnol; 2005 Nov; 23(11):1383-90. PubMed ID: 16273071 [TBL] [Abstract][Full Text] [Related]
14. Biological function of unannotated transcription during the early development of Drosophila melanogaster. Manak JR; Dike S; Sementchenko V; Kapranov P; Biemar F; Long J; Cheng J; Bell I; Ghosh S; Piccolboni A; Gingeras TR Nat Genet; 2006 Oct; 38(10):1151-8. PubMed ID: 16951679 [TBL] [Abstract][Full Text] [Related]
15. Conserved distances between vertebrate highly conserved elements. Sun H; Skogerbø G; Chen R Hum Mol Genet; 2006 Oct; 15(19):2911-22. PubMed ID: 16923797 [TBL] [Abstract][Full Text] [Related]
16. [P elements comprising mini-white marker gene suppression features in intergenic regions of Drosophila melanogaster genome]. Babenko VN; Matvienko VF Tsitologiia; 2013; 55(3):181-4. PubMed ID: 23795462 [TBL] [Abstract][Full Text] [Related]
17. Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers. Polychronopoulos D; Weitschek E; Dimitrieva S; Bucher P; Felici G; Almirantis Y Genomics; 2014 Aug; 104(2):79-86. PubMed ID: 25058025 [TBL] [Abstract][Full Text] [Related]
18. Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species. Wang X; Gu J; Zhang MQ; Li Y Bioinformatics; 2008 Jan; 24(2):165-71. PubMed ID: 18037683 [TBL] [Abstract][Full Text] [Related]
19. Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs. Kern AD; Barbash DA; Chang Mell J; Hupalo D; Jensen A Genome Biol Evol; 2015 Jan; 7(3):689-98. PubMed ID: 25618141 [TBL] [Abstract][Full Text] [Related]