213 related articles for article (PubMed ID: 20597503)
1. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease.
Steen KA; Malhotra A; Weeks KM
J Am Chem Soc; 2010 Jul; 132(29):9940-3. PubMed ID: 20597503
[TBL] [Abstract][Full Text] [Related]
2. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA.
Steen KA; Siegfried NA; Weeks KM
Nat Protoc; 2011 Oct; 6(11):1683-94. PubMed ID: 21979276
[TBL] [Abstract][Full Text] [Related]
3. Exploring RNA structural codes with SHAPE chemistry.
Weeks KM; Mauger DM
Acc Chem Res; 2011 Dec; 44(12):1280-91. PubMed ID: 21615079
[TBL] [Abstract][Full Text] [Related]
4. RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).
Merino EJ; Wilkinson KA; Coughlan JL; Weeks KM
J Am Chem Soc; 2005 Mar; 127(12):4223-31. PubMed ID: 15783204
[TBL] [Abstract][Full Text] [Related]
5. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.
Wilkinson KA; Merino EJ; Weeks KM
Nat Protoc; 2006; 1(3):1610-6. PubMed ID: 17406453
[TBL] [Abstract][Full Text] [Related]
6. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Lucks JB; Mortimer SA; Trapnell C; Luo S; Aviran S; Schroth GP; Pachter L; Doudna JA; Arkin AP
Proc Natl Acad Sci U S A; 2011 Jul; 108(27):11063-8. PubMed ID: 21642531
[TBL] [Abstract][Full Text] [Related]
7. Substrate recognition and catalysis by the exoribonuclease RNase R.
Vincent HA; Deutscher MP
J Biol Chem; 2006 Oct; 281(40):29769-75. PubMed ID: 16893880
[TBL] [Abstract][Full Text] [Related]
8. Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution.
Mortimer SA; Weeks KM
Nat Protoc; 2009; 4(10):1413-21. PubMed ID: 19745823
[TBL] [Abstract][Full Text] [Related]
9. RNase R mutants elucidate the catalysis of structured RNA: RNA-binding domains select the RNAs targeted for degradation.
Matos RG; Barbas A; Arraiano CM
Biochem J; 2009 Sep; 423(2):291-301. PubMed ID: 19630750
[TBL] [Abstract][Full Text] [Related]
10. SHAPE to Probe RNA Structure and RNA-Protein Interactions In Vitro.
Saha K; Ghosh G
Methods Mol Biol; 2023; 2666():69-80. PubMed ID: 37166657
[TBL] [Abstract][Full Text] [Related]
11. SHAMS: combining chemical modification of RNA with mass spectrometry to examine polypurine tract-containing RNA/DNA hybrids.
Turner KB; Yi-Brunozzi HY; Brinson RG; Marino JP; Fabris D; Le Grice SF
RNA; 2009 Aug; 15(8):1605-13. PubMed ID: 19535461
[TBL] [Abstract][Full Text] [Related]
12. Quantitative Understanding of SHAPE Mechanism from RNA Structure and Dynamics Analysis.
Hurst T; Xu X; Zhao P; Chen SJ
J Phys Chem B; 2018 May; 122(18):4771-4783. PubMed ID: 29659274
[TBL] [Abstract][Full Text] [Related]
13. Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.
Wilkinson KA; Vasa SM; Deigan KE; Mortimer SA; Giddings MC; Weeks KM
RNA; 2009 Jul; 15(7):1314-21. PubMed ID: 19458034
[TBL] [Abstract][Full Text] [Related]
14. Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex.
Frazão C; McVey CE; Amblar M; Barbas A; Vonrhein C; Arraiano CM; Carrondo MA
Nature; 2006 Sep; 443(7107):110-4. PubMed ID: 16957732
[TBL] [Abstract][Full Text] [Related]
15. Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation.
Hsiao YY; Yang CC; Lin CL; Lin JL; Duh Y; Yuan HS
Nat Chem Biol; 2011 Apr; 7(4):236-43. PubMed ID: 21317904
[TBL] [Abstract][Full Text] [Related]
16. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
Watters KE; Lucks JB
Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
[TBL] [Abstract][Full Text] [Related]
17. Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis.
Smola MJ; Rice GM; Busan S; Siegfried NA; Weeks KM
Nat Protoc; 2015 Nov; 10(11):1643-69. PubMed ID: 26426499
[TBL] [Abstract][Full Text] [Related]
18. The mechanisms of RNA SHAPE chemistry.
McGinnis JL; Dunkle JA; Cate JH; Weeks KM
J Am Chem Soc; 2012 Apr; 134(15):6617-24. PubMed ID: 22475022
[TBL] [Abstract][Full Text] [Related]
19. Analysis of the RNA backbone: structural analysis of riboswitches by in-line probing and selective 2'-hydroxyl acylation and primer extension.
Wakeman CA; Winkler WC
Methods Mol Biol; 2009; 540():173-91. PubMed ID: 19381560
[TBL] [Abstract][Full Text] [Related]
20. Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
Watters KE; Yu AM; Strobel EJ; Settle AH; Lucks JB
Methods; 2016 Jul; 103():34-48. PubMed ID: 27064082
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]