These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

93 related articles for article (PubMed ID: 20605925)

  • 1. G-SQZ: compact encoding of genomic sequence and quality data.
    Tembe W; Lowey J; Suh E
    Bioinformatics; 2010 Sep; 26(17):2192-4. PubMed ID: 20605925
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Compression of DNA sequence reads in FASTQ format.
    Deorowicz S; Grabowski S
    Bioinformatics; 2011 Mar; 27(6):860-2. PubMed ID: 21252073
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Data-dependent bucketing improves reference-free compression of sequencing reads.
    Patro R; Kingsford C
    Bioinformatics; 2015 Sep; 31(17):2770-7. PubMed ID: 25910696
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SOLiDzipper: A High Speed Encoding Method for the Next-Generation Sequencing Data.
    Jeon YJ; Park SH; Ahn SM; Hwang HJ
    Evol Bioinform Online; 2011 Mar; 7():1-6. PubMed ID: 21487532
    [TBL] [Abstract][Full Text] [Related]  

  • 5. AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.
    Paridaens T; Van Wallendael G; De Neve W; Lambert P
    Bioinformatics; 2017 May; 33(10):1464-1472. PubMed ID: 28057687
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DELIMINATE--a fast and efficient method for loss-less compression of genomic sequences: sequence analysis.
    Mohammed MH; Dutta A; Bose T; Chadaram S; Mande SS
    Bioinformatics; 2012 Oct; 28(19):2527-9. PubMed ID: 22833526
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Transformations for the compression of FASTQ quality scores of next-generation sequencing data.
    Wan R; Anh VN; Asai K
    Bioinformatics; 2012 Mar; 28(5):628-35. PubMed ID: 22171329
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analysis of high-throughput sequencing data.
    Mane SP; Modise T; Sobral BW
    Methods Mol Biol; 2011; 678():1-11. PubMed ID: 20931368
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reference-based compression of short-read sequences using path encoding.
    Kingsford C; Patro R
    Bioinformatics; 2015 Jun; 31(12):1920-8. PubMed ID: 25649622
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies.
    Giancarlo R; Rombo SE; Utro F
    Brief Bioinform; 2014 May; 15(3):390-406. PubMed ID: 24347576
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Toward a Better Compression for DNA Sequences Using Huffman Encoding.
    Al-Okaily A; Almarri B; Al Yami S; Huang CH
    J Comput Biol; 2017 Apr; 24(4):280-288. PubMed ID: 27960065
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BIND - an algorithm for loss-less compression of nucleotide sequence data.
    Bose T; Mohammed MH; Dutta A; Mande SS
    J Biosci; 2012 Sep; 37(4):785-9. PubMed ID: 22922203
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Nongreedy Unbalanced Huffman Tree Compressor for Single and Multifasta Files.
    Alyami S; Huang CH
    J Comput Biol; 2020 Jun; 27(6):868-876. PubMed ID: 31553226
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Optimal spliced alignments of short sequence reads.
    De Bona F; Ossowski S; Schneeberger K; Rätsch G
    Bioinformatics; 2008 Aug; 24(16):i174-80. PubMed ID: 18689821
    [TBL] [Abstract][Full Text] [Related]  

  • 15. AQUa: an adaptive framework for compression of sequencing quality scores with random access functionality.
    Paridaens T; Van Wallendael G; De Neve W; Lambert P
    Bioinformatics; 2018 Feb; 34(3):425-433. PubMed ID: 29028894
    [TBL] [Abstract][Full Text] [Related]  

  • 16. High-throughput DNA sequence data compression.
    Zhu Z; Zhang Y; Ji Z; He S; Yang X
    Brief Bioinform; 2015 Jan; 16(1):1-15. PubMed ID: 24300111
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
    Hashimoto T; de Hoon MJ; Grimmond SM; Daub CO; Hayashizaki Y; Faulkner GJ
    Bioinformatics; 2009 Oct; 25(19):2613-4. PubMed ID: 19605420
    [TBL] [Abstract][Full Text] [Related]  

  • 18. JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.
    Latorre M; Silva H; Saba J; Guziolowski C; Vizoso P; Martinez V; Maldonado J; Morales A; Caroca R; Cambiazo V; Campos-Vargas R; Gonzalez M; Orellana A; Retamales J; Meisel LA
    BMC Bioinformatics; 2006 Nov; 7():513. PubMed ID: 17123449
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sequence Compression Benchmark (SCB) database-A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences.
    Kryukov K; Ueda MT; Nakagawa S; Imanishi T
    Gigascience; 2020 Jul; 9(7):. PubMed ID: 32627830
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Pegasys: software for executing and integrating analyses of biological sequences.
    Shah SP; He DY; Sawkins JN; Druce JC; Quon G; Lett D; Zheng GX; Xu T; Ouellette BF
    BMC Bioinformatics; 2004 Apr; 5():40. PubMed ID: 15096276
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.