293 related articles for article (PubMed ID: 20628621)
1. The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies.
Schloss PD
PLoS Comput Biol; 2010 Jul; 6(7):e1000844. PubMed ID: 20628621
[TBL] [Abstract][Full Text] [Related]
2. PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets.
Pinto AJ; Raskin L
PLoS One; 2012; 7(8):e43093. PubMed ID: 22905208
[TBL] [Abstract][Full Text] [Related]
3. De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data.
Avershina E; Frisli T; Rudi K
Microbes Environ; 2013; 28(2):211-6. PubMed ID: 23603801
[TBL] [Abstract][Full Text] [Related]
4. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys.
Youssef N; Sheik CS; Krumholz LR; Najar FZ; Roe BA; Elshahed MS
Appl Environ Microbiol; 2009 Aug; 75(16):5227-36. PubMed ID: 19561178
[TBL] [Abstract][Full Text] [Related]
5. Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems.
Shang L; Gardner DP; Xu W; Cannone JJ; Miranker DP; Ozer S; Gutell RR
BMC Syst Biol; 2013; 7 Suppl 4(Suppl 4):S13. PubMed ID: 24565058
[TBL] [Abstract][Full Text] [Related]
6. Widely used, short 16S rRNA mitochondrial gene fragments yield poor and erratic results in phylogenetic estimation and species delimitation of amphibians.
Chan KO; Hertwig ST; Neokleous DN; Flury JM; Brown RM
BMC Ecol Evol; 2022 Mar; 22(1):37. PubMed ID: 35346025
[TBL] [Abstract][Full Text] [Related]
7. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
8. Soil bacterial diversity screening using single 16S rRNA gene V regions coupled with multi-million read generating sequencing technologies.
Vasileiadis S; Puglisi E; Arena M; Cappa F; Cocconcelli PS; Trevisan M
PLoS One; 2012; 7(8):e42671. PubMed ID: 22880076
[TBL] [Abstract][Full Text] [Related]
9. Testing evolutionary models to explain the process of nucleotide substitution in gut bacterial 16S rRNA gene sequences.
Garcia-Mazcorro JF
FEMS Microbiol Lett; 2013 Sep; 346(2):97-104. PubMed ID: 23808388
[TBL] [Abstract][Full Text] [Related]
10. Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny.
Rudi K; Zimonja M; Næs T
Int J Syst Evol Microbiol; 2006 Jul; 56(Pt 7):1565-1575. PubMed ID: 16825631
[TBL] [Abstract][Full Text] [Related]
11. Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes.
Yamamoto S; Harayama S
Int J Syst Bacteriol; 1998 Jul; 48 Pt 3():813-9. PubMed ID: 9734035
[TBL] [Abstract][Full Text] [Related]
12. Estimating bacterial diversity for ecological studies: methods, metrics, and assumptions.
Birtel J; Walser JC; Pichon S; Bürgmann H; Matthews B
PLoS One; 2015; 10(4):e0125356. PubMed ID: 25915756
[TBL] [Abstract][Full Text] [Related]
13. Full-length 16S rRNA gene classification of Atlantic salmon bacteria and effects of using different 16S variable regions on community structure analysis.
Klemetsen T; Willassen NP; Karlsen CR
Microbiologyopen; 2019 Oct; 8(10):e898. PubMed ID: 31271529
[TBL] [Abstract][Full Text] [Related]
14. Size-variable zone in V3 region of 16S rRNA.
Vargas-Albores F; Ortiz-Suárez LE; Villalpando-Canchola E; Martínez-Porchas M
RNA Biol; 2017 Nov; 14(11):1514-1521. PubMed ID: 28440695
[TBL] [Abstract][Full Text] [Related]
15. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome.
Nossa CW; Oberdorf WE; Yang L; Aas JA; Paster BJ; Desantis TZ; Brodie EL; Malamud D; Poles MA; Pei Z
World J Gastroenterol; 2010 Sep; 16(33):4135-44. PubMed ID: 20806429
[TBL] [Abstract][Full Text] [Related]
16. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine.
Claesson MJ; O'Sullivan O; Wang Q; Nikkilä J; Marchesi JR; Smidt H; de Vos WM; Ross RP; O'Toole PW
PLoS One; 2009 Aug; 4(8):e6669. PubMed ID: 19693277
[TBL] [Abstract][Full Text] [Related]
17. Construction & assessment of a unified curated reference database for improving the taxonomic classification of bacteria using 16S rRNA sequence data.
Agnihotry S; Sarangi AN; Aggarwal R
Indian J Med Res; 2020 Jan; 151(1):93-103. PubMed ID: 32134020
[TBL] [Abstract][Full Text] [Related]
18. Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli.
Martínez-Murcia AJ; Antón AI; Rodríguez-Valera F
Int J Syst Bacteriol; 1999 Apr; 49 Pt 2():601-10. PubMed ID: 10319482
[TBL] [Abstract][Full Text] [Related]
19. The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Yarza P; Richter M; Peplies J; Euzeby J; Amann R; Schleifer KH; Ludwig W; Glöckner FO; Rosselló-Móra R
Syst Appl Microbiol; 2008 Sep; 31(4):241-50. PubMed ID: 18692976
[TBL] [Abstract][Full Text] [Related]
20. Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken).
Valenzuela-González F; Martínez-Porchas M; Villalpando-Canchola E; Vargas-Albores F
J Microbiol Methods; 2016 Mar; 122():38-42. PubMed ID: 26812576
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
