199 related articles for article (PubMed ID: 20643866)
1. MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment.
Nguyen MA; Klaere S; von Haeseler A
Mol Biol Evol; 2011 Jan; 28(1):143-52. PubMed ID: 20643866
[TBL] [Abstract][Full Text] [Related]
2. Hominoid phylogeny estimated by model selection using goodness of fit significance tests.
Czelusniak J; Goodman M
Mol Phylogenet Evol; 1995 Sep; 4(3):283-90. PubMed ID: 8845964
[TBL] [Abstract][Full Text] [Related]
3. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
4. GARD: a genetic algorithm for recombination detection.
Kosakovsky Pond SL; Posada D; Gravenor MB; Woelk CH; Frost SD
Bioinformatics; 2006 Dec; 22(24):3096-8. PubMed ID: 17110367
[TBL] [Abstract][Full Text] [Related]
5. Empirical models for substitution in ribosomal RNA.
Smith AD; Lui TW; Tillier ER
Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
[TBL] [Abstract][Full Text] [Related]
6. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
7. Simultaneous statistical multiple alignment and phylogeny reconstruction.
Fleissner R; Metzler D; von Haeseler A
Syst Biol; 2005 Aug; 54(4):548-61. PubMed ID: 16085574
[TBL] [Abstract][Full Text] [Related]
8. Independence of alignment and tree search.
Simmons MP
Mol Phylogenet Evol; 2004 Jun; 31(3):874-9. PubMed ID: 15120385
[TBL] [Abstract][Full Text] [Related]
9. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees.
Liu K; Raghavan S; Nelesen S; Linder CR; Warnow T
Science; 2009 Jun; 324(5934):1561-4. PubMed ID: 19541996
[TBL] [Abstract][Full Text] [Related]
10. A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor.
Brooks DJ; Fresco JR; Singh M
Bioinformatics; 2004 Sep; 20(14):2251-7. PubMed ID: 15073018
[TBL] [Abstract][Full Text] [Related]
11. Phylogenetic inference from conserved sites alignments.
Grundy WN; Naylor GJ
J Exp Zool; 1999 Aug; 285(2):128-39. PubMed ID: 10440724
[TBL] [Abstract][Full Text] [Related]
12. pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.
Minh BQ; Vinh le S; von Haeseler A; Schmidt HA
Bioinformatics; 2005 Oct; 21(19):3794-6. PubMed ID: 16046495
[TBL] [Abstract][Full Text] [Related]
13. Scoredist: a simple and robust protein sequence distance estimator.
Sonnhammer EL; Hollich V
BMC Bioinformatics; 2005 Apr; 6():108. PubMed ID: 15857510
[TBL] [Abstract][Full Text] [Related]
14. Vestige: maximum likelihood phylogenetic footprinting.
Wakefield MJ; Maxwell P; Huttley GA
BMC Bioinformatics; 2005 May; 6():130. PubMed ID: 15921531
[TBL] [Abstract][Full Text] [Related]
15. Representation in stochastic search for phylogenetic tree reconstruction.
Weber G; Ohno-Machado L; Shieber S
J Biomed Inform; 2006 Feb; 39(1):43-50. PubMed ID: 16359929
[TBL] [Abstract][Full Text] [Related]
16. Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
Husmeier D
Bioinformatics; 2005 Sep; 21 Suppl 2():ii166-72. PubMed ID: 16204097
[TBL] [Abstract][Full Text] [Related]
17. Adaptive distance measures for resolving K2P quartets: metric separation versus stochastic noise.
Gronau I; Moran S; Yavneh I
J Comput Biol; 2010 Nov; 17(11):1509-18. PubMed ID: 20575667
[TBL] [Abstract][Full Text] [Related]
18. A "Long Indel" model for evolutionary sequence alignment.
Miklós I; Lunter GA; Holmes I
Mol Biol Evol; 2004 Mar; 21(3):529-40. PubMed ID: 14694074
[TBL] [Abstract][Full Text] [Related]
19. In silico sequence evolution with site-specific interactions along phylogenetic trees.
Gesell T; von Haeseler A
Bioinformatics; 2006 Mar; 22(6):716-22. PubMed ID: 16332711
[TBL] [Abstract][Full Text] [Related]
20. Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny.
Fritzsch G; Schlegel M; Stadler PF
J Theor Biol; 2006 Jun; 240(4):511-20. PubMed ID: 16325206
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
