808 related articles for article (PubMed ID: 20644507)
1. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
2. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
Benhalevy D; McFarland HL; Sarshad AA; Hafner M
Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
[TBL] [Abstract][Full Text] [Related]
3. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
4. A non-radioactive, improved PAR-CLIP and small RNA cDNA library preparation protocol.
Anastasakis DG; Jacob A; Konstantinidou P; Meguro K; Claypool D; Cekan P; Haase AD; Hafner M
Nucleic Acids Res; 2021 May; 49(8):e45. PubMed ID: 33503264
[TBL] [Abstract][Full Text] [Related]
5. PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins.
Spitzer J; Hafner M; Landthaler M; Ascano M; Farazi T; Wardle G; Nusbaum J; Khorshid M; Burger L; Zavolan M; Tuschl T
Methods Enzymol; 2014; 539():113-61. PubMed ID: 24581442
[TBL] [Abstract][Full Text] [Related]
6. iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.
Konig J; Zarnack K; Rot G; Curk T; Kayikci M; Zupan B; Turner DJ; Luscombe NM; Ule J
J Vis Exp; 2011 Apr; (50):. PubMed ID: 21559008
[TBL] [Abstract][Full Text] [Related]
7. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
[TBL] [Abstract][Full Text] [Related]
8. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2022; 2404():167-188. PubMed ID: 34694609
[TBL] [Abstract][Full Text] [Related]
9. [Advances in technologies for large-scale enrichment and identification of ribonucleic acid-protein complexes].
Fan Z; Qin W
Se Pu; 2021 Feb; 39(2):105-111. PubMed ID: 34227341
[TBL] [Abstract][Full Text] [Related]
10. PAR-CLIP Assay in Ferroptosis.
Xue X; Wang M; Zhang X; Ma L; Wang J
Methods Mol Biol; 2023; 2712():29-43. PubMed ID: 37578694
[TBL] [Abstract][Full Text] [Related]
11. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Van Nostrand EL; Pratt GA; Shishkin AA; Gelboin-Burkhart C; Fang MY; Sundararaman B; Blue SM; Nguyen TB; Surka C; Elkins K; Stanton R; Rigo F; Guttman M; Yeo GW
Nat Methods; 2016 Jun; 13(6):508-14. PubMed ID: 27018577
[TBL] [Abstract][Full Text] [Related]
12. Optimized infrared photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (IR-PAR-CLIP) protocol identifies novel IGF2BP3-interacting RNAs in colon cancer cells.
Anisimova AS; Karagöz GE
RNA; 2023 Nov; 29(11):1818-1836. PubMed ID: 37582618
[TBL] [Abstract][Full Text] [Related]
13. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
Li Q; Uemura Y; Kawahara Y
Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
[TBL] [Abstract][Full Text] [Related]
14. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
Cell; 2010 Apr; 141(1):129-41. PubMed ID: 20371350
[TBL] [Abstract][Full Text] [Related]
15. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
[TBL] [Abstract][Full Text] [Related]
16. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
[TBL] [Abstract][Full Text] [Related]
17. Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA.
Patton RD; Sanjeev M; Woodward LA; Mabin JW; Bundschuh R; Singh G
RNA; 2020 Sep; 26(9):1216-1233. PubMed ID: 32467309
[TBL] [Abstract][Full Text] [Related]
18. Identification of RNA-protein interaction networks using PAR-CLIP.
Ascano M; Hafner M; Cekan P; Gerstberger S; Tuschl T
Wiley Interdiscip Rev RNA; 2012; 3(2):159-77. PubMed ID: 22213601
[TBL] [Abstract][Full Text] [Related]
19. Genome-Wide Profiling of RNA-Protein Interactions Using CLIP-Seq.
Stork C; Zheng S
Methods Mol Biol; 2016; 1421():137-51. PubMed ID: 26965263
[TBL] [Abstract][Full Text] [Related]
20. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Experimental Procedures.
Han T; Kim JK
Methods Mol Biol; 2016; 1361():77-90. PubMed ID: 26483017
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
