These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

813 related articles for article (PubMed ID: 20645303)

  • 1. NUPACK: Analysis and design of nucleic acid systems.
    Zadeh JN; Steenberg CD; Bois JS; Wolfe BR; Pierce MB; Khan AR; Dirks RM; Pierce NA
    J Comput Chem; 2011 Jan; 32(1):170-3. PubMed ID: 20645303
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed.
    Fornace ME; Porubsky NJ; Pierce NA
    ACS Synth Biol; 2020 Oct; 9(10):2665-2678. PubMed ID: 32910644
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Constrained Multistate Sequence Design for Nucleic Acid Reaction Pathway Engineering.
    Wolfe BR; Porubsky NJ; Zadeh JN; Dirks RM; Pierce NA
    J Am Chem Soc; 2017 Mar; 139(8):3134-3144. PubMed ID: 28191938
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structure clustering features on the Sfold Web server.
    Chan CY; Lawrence CE; Ding Y
    Bioinformatics; 2005 Oct; 21(20):3926-8. PubMed ID: 16109749
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Nucleic acid sequence design via efficient ensemble defect optimization.
    Zadeh JN; Wolfe BR; Pierce NA
    J Comput Chem; 2011 Feb; 32(3):439-52. PubMed ID: 20717905
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SwS: a solvation web service for nucleic acids.
    Auffinger P; Hashem Y
    Bioinformatics; 2007 Apr; 23(8):1035-7. PubMed ID: 17324939
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Sfold web server for statistical folding and rational design of nucleic acids.
    Ding Y; Chan CY; Lawrence CE
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W135-41. PubMed ID: 15215366
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Sequence Design for a Test Tube of Interacting Nucleic Acid Strands.
    Wolfe BR; Pierce NA
    ACS Synth Biol; 2015 Oct; 4(10):1086-100. PubMed ID: 25329866
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots.
    Dirks RM; Pierce NA
    J Comput Chem; 2004 Jul; 25(10):1295-304. PubMed ID: 15139042
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Functional metal ions in nucleic acids.
    Müller J
    Metallomics; 2010 May; 2(5):318-27. PubMed ID: 21072378
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Synthesis and properties of the simplified nucleic acid glycol nucleic acid.
    Meggers E; Zhang L
    Acc Chem Res; 2010 Aug; 43(8):1092-102. PubMed ID: 20405911
    [TBL] [Abstract][Full Text] [Related]  

  • 12. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Thermodynamic heuristics with case-based reasoning: combined insights for RNA pseudoknot secondary structure.
    Al-Khatib RM; Rashid NA; Abdullah R
    J Biomol Struct Dyn; 2011 Aug; 29(1):1-26. PubMed ID: 21696223
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots.
    Xayaphoummine A; Bucher T; Isambert H
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W605-10. PubMed ID: 15980546
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Collective variable modelling of nucleic acids.
    Lafontaine I; Lavery R
    Curr Opin Struct Biol; 1999 Apr; 9(2):170-6. PubMed ID: 10322207
    [TBL] [Abstract][Full Text] [Related]  

  • 16. De novo design of sequences for nucleic acid structural engineering.
    Seeman NC
    J Biomol Struct Dyn; 1990 Dec; 8(3):573-81. PubMed ID: 2100519
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DNAlive: a tool for the physical analysis of DNA at the genomic scale.
    Goñi JR; Fenollosa C; Pérez A; Torrents D; Orozco M
    Bioinformatics; 2008 Aug; 24(15):1731-2. PubMed ID: 18544548
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Nucleic acid modeling tool (NAMOT): an interactive graphic tool for modeling nucleic acid structures.
    Tung CS; Carter ES
    Comput Appl Biosci; 1994 Jul; 10(4):427-33. PubMed ID: 7528631
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A partition function algorithm for nucleic acid secondary structure including pseudoknots.
    Dirks RM; Pierce NA
    J Comput Chem; 2003 Oct; 24(13):1664-77. PubMed ID: 12926009
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Nucleic acid based molecular devices.
    Krishnan Y; Simmel FC
    Angew Chem Int Ed Engl; 2011 Mar; 50(14):3124-56. PubMed ID: 21432950
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 41.