These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
120 related articles for article (PubMed ID: 20649421)
1. Re-evaluating the "rules" of protein topology. Grainger B; Sadowski MI; Taylor WR J Comput Biol; 2010 Oct; 17(10):1371-84. PubMed ID: 20649421 [TBL] [Abstract][Full Text] [Related]
2. The anatomy of protein beta-sheet topology. Zhang C; Kim SH J Mol Biol; 2000 Jun; 299(4):1075-89. PubMed ID: 10843859 [TBL] [Abstract][Full Text] [Related]
3. Structural similarity between two-layer alpha/beta and beta-proteins. Efimov AV J Mol Biol; 1995 Jan; 245(4):402-15. PubMed ID: 7837272 [TBL] [Abstract][Full Text] [Related]
4. Understanding the role of the topology in protein folding by computational inverse folding experiments. Mucherino A; Costantini S; di Serafino D; D'Apuzzo M; Facchiano A; Colonna G Comput Biol Chem; 2008 Aug; 32(4):233-9. PubMed ID: 18479970 [TBL] [Abstract][Full Text] [Related]
5. Identifying the tertiary fold of small proteins with different topologies from sequence and secondary structure using the genetic algorithm and extended criteria specific for strand regions. Dandekar T; Argos P J Mol Biol; 1996 Mar; 256(3):645-60. PubMed ID: 8604145 [TBL] [Abstract][Full Text] [Related]
6. A method for the prediction of surface "U"-turns and transglobular connections in small proteins. Kolinski A; Skolnick J; Godzik A; Hu WP Proteins; 1997 Feb; 27(2):290-308. PubMed ID: 9061792 [TBL] [Abstract][Full Text] [Related]
7. Contact patterns between helices and strands of sheet define protein folding patterns. Kamat AP; Lesk AM Proteins; 2007 Mar; 66(4):869-76. PubMed ID: 17206659 [TBL] [Abstract][Full Text] [Related]
8. Cataloging topologies of protein folding patterns. Konagurthu AS; Lesk AM J Mol Recognit; 2010; 23(2):253-7. PubMed ID: 20151416 [TBL] [Abstract][Full Text] [Related]
9. A 'periodic table' for protein structures. Taylor WR Nature; 2002 Apr; 416(6881):657-60. PubMed ID: 11948354 [TBL] [Abstract][Full Text] [Related]
10. Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials. Hubbard TJ; Park J Proteins; 1995 Nov; 23(3):398-402. PubMed ID: 8710832 [TBL] [Abstract][Full Text] [Related]
11. Distributions of beta sheets in proteins with application to structure prediction. Ruczinski I; Kooperberg C; Bonneau R; Baker D Proteins; 2002 Jul; 48(1):85-97. PubMed ID: 12012340 [TBL] [Abstract][Full Text] [Related]
12. Native secondary structure topology has near minimum contact energy among all possible geometrically constrained topologies. Sun W; He J Proteins; 2009 Oct; 77(1):159-73. PubMed ID: 19415754 [TBL] [Abstract][Full Text] [Related]
13. Computational design of proteins stereochemically optimized in size, stability, and folding speed. Joshi S; Rana S; Wangikar P; Durani S Biopolymers; 2006 Oct; 83(2):122-34. PubMed ID: 16683262 [TBL] [Abstract][Full Text] [Related]
14. Assembly of protein tertiary structures from secondary structures using optimized potentials. Hoang TX; Seno F; Banavar JR; Cieplak M; Maritan A Proteins; 2003 Aug; 52(2):155-65. PubMed ID: 12833540 [TBL] [Abstract][Full Text] [Related]
15. Folding of elongated proteins: conventional or anomalous? Hagai T; Levy Y J Am Chem Soc; 2008 Oct; 130(43):14253-62. PubMed ID: 18834131 [TBL] [Abstract][Full Text] [Related]
16. Protein topology recognition from secondary structure sequences: application of the hidden Markov models to the alpha class proteins. Di Francesco V; Garnier J; Munson PJ J Mol Biol; 1997 Mar; 267(2):446-63. PubMed ID: 9096237 [TBL] [Abstract][Full Text] [Related]
17. TOPS: an enhanced database of protein structural topology. Michalopoulos I; Torrance GM; Gilbert DR; Westhead DR Nucleic Acids Res; 2004 Jan; 32(Database issue):D251-4. PubMed ID: 14681405 [TBL] [Abstract][Full Text] [Related]
18. Importance of sequence specificity for predicting protein folding pathways: perturbed Gaussian chain model. Kameda T Proteins; 2003 Nov; 53(3):616-28. PubMed ID: 14579353 [TBL] [Abstract][Full Text] [Related]
19. Probing the "dark matter" of protein fold space. Taylor WR; Chelliah V; Hollup SM; MacDonald JT; Jonassen I Structure; 2009 Sep; 17(9):1244-52. PubMed ID: 19748345 [TBL] [Abstract][Full Text] [Related]
20. A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure. Gerstein M J Mol Biol; 1997 Dec; 274(4):562-76. PubMed ID: 9417935 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]