BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

193 related articles for article (PubMed ID: 20671147)

  • 1. MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.
    Forth T; McConkey GA; Westhead DR
    Bioinformatics; 2010 Sep; 26(18):2352-3. PubMed ID: 20671147
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SBML export interface for the systems biology toolbox for MATLAB.
    Schmidt H; Drews G; Vera J; Wolkenhauer O
    Bioinformatics; 2007 May; 23(10):1297-8. PubMed ID: 17384017
    [TBL] [Abstract][Full Text] [Related]  

  • 3. METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.
    Gille C; Hoffmann S; Holzhütter HG
    BMC Syst Biol; 2007 Jan; 1():5. PubMed ID: 17408512
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
    Zi Z; Klipp E
    Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SBMLToolbox: an SBML toolbox for MATLAB users.
    Keating SM; Bornstein BJ; Finney A; Hucka M
    Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks.
    König M; Holzhütter HG
    Genome Inform; 2010; 24():96-103. PubMed ID: 22081592
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Supporting SBML as a model exchange format in software applications.
    Keating SM; Le Novère N
    Methods Mol Biol; 2013; 1021():201-25. PubMed ID: 23715987
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
    Schneider J; Vorhölter FJ; Trost E; Blom J; Musa YR; Neuweger H; Niehaus K; Schatschneider S; Tauch A; Goesmann A
    Genet Mol Res; 2010 Aug; 9(3):1660-72. PubMed ID: 20799163
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An application programming interface for CellNetAnalyzer.
    Klamt S; von Kamp A
    Biosystems; 2011 Aug; 105(2):162-8. PubMed ID: 21315797
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SBMLDiagrams: a python package to process and visualize SBML layout and render.
    Xu J; Jiang J; Sauro HM
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36370074
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
    Pitkänen E; Akerlund A; Rantanen A; Jouhten P; Ukkonen E
    J Integr Bioinform; 2008 Aug; 5(2):. PubMed ID: 20134058
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MOCCASIN: converting MATLAB ODE models to SBML.
    Gómez HF; Hucka M; Keating SM; Nudelman G; Iber D; Sealfon SC
    Bioinformatics; 2016 Jun; 32(12):1905-6. PubMed ID: 26861819
    [TBL] [Abstract][Full Text] [Related]  

  • 13. JSBML: a flexible Java library for working with SBML.
    Dräger A; Rodriguez N; Dumousseau M; Dörr A; Wrzodek C; Le Novère N; Zell A; Hucka M
    Bioinformatics; 2011 Aug; 27(15):2167-8. PubMed ID: 21697129
    [TBL] [Abstract][Full Text] [Related]  

  • 14. libRoadRunner: a high performance SBML simulation and analysis library.
    Somogyi ET; Bouteiller JM; Glazier JA; König M; Medley JK; Swat MH; Sauro HM
    Bioinformatics; 2015 Oct; 31(20):3315-21. PubMed ID: 26085503
    [TBL] [Abstract][Full Text] [Related]  

  • 15. JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
    Rodriguez N; Thomas A; Watanabe L; Vazirabad IY; Kofia V; Gómez HF; Mittag F; Matthes J; Rudolph J; Wrzodek F; Netz E; Diamantikos A; Eichner J; Keller R; Wrzodek C; Fröhlich S; Lewis NE; Myers CJ; Le Novère N; Palsson BØ; Hucka M; Dräger A
    Bioinformatics; 2015 Oct; 31(20):3383-6. PubMed ID: 26079347
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Cyclone: java-based querying and computing with Pathway/Genome databases.
    Le Fèvre F; Smidtas S; Schächter V
    Bioinformatics; 2007 May; 23(10):1299-300. PubMed ID: 17392333
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
    Hucka M; Bergmann FT; Dräger A; Hoops S; Keating SM; Le Novère N; Myers CJ; Olivier BG; Sahle S; Schaff JC; Smith LP; Waltemath D; Wilkinson DJ
    J Integr Bioinform; 2018 Mar; 15(1):. PubMed ID: 29522418
    [TBL] [Abstract][Full Text] [Related]  

  • 18. FlexFlux: combining metabolic flux and regulatory network analyses.
    Marmiesse L; Peyraud R; Cottret L
    BMC Syst Biol; 2015 Dec; 9():93. PubMed ID: 26666757
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R; Singhal M
    Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
    [TBL] [Abstract][Full Text] [Related]  

  • 20. KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.
    Moutselos K; Kanaris I; Chatziioannou A; Maglogiannis I; Kolisis FN
    BMC Bioinformatics; 2009 Oct; 10():324. PubMed ID: 19814801
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.