193 related articles for article (PubMed ID: 20671147)
21. The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
Machné R; Finney A; Müller S; Lu J; Widder S; Flamm C
Bioinformatics; 2006 Jun; 22(11):1406-7. PubMed ID: 16527832
[TBL] [Abstract][Full Text] [Related]
22. LibSBMLSim: a reference implementation of fully functional SBML simulator.
Takizawa H; Nakamura K; Tabira A; Chikahara Y; Matsui T; Hiroi N; Funahashi A
Bioinformatics; 2013 Jun; 29(11):1474-6. PubMed ID: 23564843
[TBL] [Abstract][Full Text] [Related]
23. Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.
Hucka M; Finney A; Bornstein BJ; Keating SM; Shapiro BE; Matthews J; Kovitz BL; Schilstra MJ; Funahashi A; Doyle JC; Kitano H
Syst Biol (Stevenage); 2004 Jun; 1(1):41-53. PubMed ID: 17052114
[TBL] [Abstract][Full Text] [Related]
24. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M; Finney A; Sauro HM; Bolouri H; Doyle JC; Kitano H; Arkin AP; Bornstein BJ; Bray D; Cornish-Bowden A; Cuellar AA; Dronov S; Gilles ED; Ginkel M; Gor V; Goryanin II; Hedley WJ; Hodgman TC; Hofmeyr JH; Hunter PJ; Juty NS; Kasberger JL; Kremling A; Kummer U; Le Novère N; Loew LM; Lucio D; Mendes P; Minch E; Mjolsness ED; Nakayama Y; Nelson MR; Nielsen PF; Sakurada T; Schaff JC; Shapiro BE; Shimizu TS; Spence HD; Stelling J; Takahashi K; Tomita M; Wagner J; Wang J;
Bioinformatics; 2003 Mar; 19(4):524-31. PubMed ID: 12611808
[TBL] [Abstract][Full Text] [Related]
25. SBML2HYB: a Python interface for SBML compatible hybrid modeling.
Pinto J; Costa RS; Alexandre L; Ramos J; Oliveira R
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36661327
[TBL] [Abstract][Full Text] [Related]
26. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
Hucka M; Bergmann FT; Chaouiya C; Dräger A; Hoops S; Keating SM; König M; Novère NL; Myers CJ; Olivier BG; Sahle S; Schaff JC; Sheriff R; Smith LP; Waltemath D; Wilkinson DJ; Zhang F
J Integr Bioinform; 2019 Jun; 16(2):. PubMed ID: 31219795
[TBL] [Abstract][Full Text] [Related]
27. MicrobesFlux: a web platform for drafting metabolic models from the KEGG database.
Feng X; Xu Y; Chen Y; Tang YJ
BMC Syst Biol; 2012 Aug; 6():94. PubMed ID: 22857267
[TBL] [Abstract][Full Text] [Related]
28. YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.
Schwarz R; Musch P; von Kamp A; Engels B; Schirmer H; Schuster S; Dandekar T
BMC Bioinformatics; 2005 Jun; 6():135. PubMed ID: 15929789
[TBL] [Abstract][Full Text] [Related]
29. SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML).
Rodriguez N; Donizelli M; Le Novère N
BMC Bioinformatics; 2007 Mar; 8():79. PubMed ID: 17341299
[TBL] [Abstract][Full Text] [Related]
30. SBML2Modelica: integrating biochemical models within open-standard simulation ecosystems.
Maggioli F; Mancini T; Tronci E
Bioinformatics; 2020 Apr; 36(7):2165-2172. PubMed ID: 31738386
[TBL] [Abstract][Full Text] [Related]
31. MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data.
Bunk B; Kucklick M; Jonas R; Münch R; Schobert M; Jahn D; Hiller K
Bioinformatics; 2006 Dec; 22(23):2962-5. PubMed ID: 17046977
[TBL] [Abstract][Full Text] [Related]
32. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.
Becker SA; Feist AM; Mo ML; Hannum G; Palsson BØ; Herrgard MJ
Nat Protoc; 2007; 2(3):727-38. PubMed ID: 17406635
[TBL] [Abstract][Full Text] [Related]
33. CSML2SBML: a novel tool for converting quantitative biological pathway models from CSML into SBML.
Li C; Nagasaki M; Ikeda E; Sekiya Y; Miyano S
Biosystems; 2014 Jul; 121():22-8. PubMed ID: 24881961
[TBL] [Abstract][Full Text] [Related]
34. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
Zinovyev A; Viara E; Calzone L; Barillot E
Bioinformatics; 2008 Mar; 24(6):876-7. PubMed ID: 18024474
[TBL] [Abstract][Full Text] [Related]
35. cPath: open source software for collecting, storing, and querying biological pathways.
Cerami EG; Bader GD; Gross BE; Sander C
BMC Bioinformatics; 2006 Nov; 7():497. PubMed ID: 17101041
[TBL] [Abstract][Full Text] [Related]
36. The markup is the model: reasoning about systems biology models in the Semantic Web era.
Kell DB; Mendes P
J Theor Biol; 2008 Jun; 252(3):538-43. PubMed ID: 18054049
[TBL] [Abstract][Full Text] [Related]
37. SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.
Zi Z
Bioinformatics; 2011 Apr; 27(7):1028-9. PubMed ID: 21303862
[TBL] [Abstract][Full Text] [Related]
38. libRoadRunner 2.0: a high performance SBML simulation and analysis library.
Welsh C; Xu J; Smith L; König M; Choi K; Sauro HM
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36478036
[TBL] [Abstract][Full Text] [Related]
39. The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core.
Gauges R; Rost U; Sahle S; Wengler K; Bergmann FT
J Integr Bioinform; 2015 Sep; 12(2):267. PubMed ID: 26528565
[TBL] [Abstract][Full Text] [Related]
40. MathSBML: a package for manipulating SBML-based biological models.
Shapiro BE; Hucka M; Finney A; Doyle J
Bioinformatics; 2004 Nov; 20(16):2829-31. PubMed ID: 15087311
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
