These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 20674389)

  • 1. An efficient data format for mass spectrometry-based proteomics.
    Shah AR; Davidson J; Monroe ME; Mayampurath AM; Danielson WF; Shi Y; Robinson AC; Clowers BH; Belov ME; Anderson GA; Smith RD
    J Am Soc Mass Spectrom; 2010 Oct; 21(10):1784-8. PubMed ID: 20674389
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A common open representation of mass spectrometry data and its application to proteomics research.
    Pedrioli PG; Eng JK; Hubley R; Vogelzang M; Deutsch EW; Raught B; Pratt B; Nilsson E; Angeletti RH; Apweiler R; Cheung K; Costello CE; Hermjakob H; Huang S; Julian RK; Kapp E; McComb ME; Oliver SG; Omenn G; Paton NW; Simpson R; Smith R; Taylor CF; Zhu W; Aebersold R
    Nat Biotechnol; 2004 Nov; 22(11):1459-66. PubMed ID: 15529173
    [TBL] [Abstract][Full Text] [Related]  

  • 3. mzDB: a file format using multiple indexing strategies for the efficient analysis of large LC-MS/MS and SWATH-MS data sets.
    Bouyssié D; Dubois M; Nasso S; Gonzalez de Peredo A; Burlet-Schiltz O; Aebersold R; Monsarrat B
    Mol Cell Proteomics; 2015 Mar; 14(3):771-81. PubMed ID: 25505153
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Common interchange standards for proteomics data: Public availability of tools and schema.
    Orchard S; Hermjakob H; Julian RK; Runte K; Sherman D; Wojcik J; Zhu W; Apweiler R
    Proteomics; 2004 Feb; 4(2):490-1. PubMed ID: 14760721
    [TBL] [Abstract][Full Text] [Related]  

  • 5. imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging.
    Römpp A; Schramm T; Hester A; Klinkert I; Both JP; Heeren RM; Stöckli M; Spengler B
    Methods Mol Biol; 2011; 696():205-24. PubMed ID: 21063949
    [TBL] [Abstract][Full Text] [Related]  

  • 6. mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements.
    Bhamber RS; Jankevics A; Deutsch EW; Jones AR; Dowsey AW
    J Proteome Res; 2021 Jan; 20(1):172-183. PubMed ID: 32864978
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience.
    Griss J; Jones AR; Sachsenberg T; Walzer M; Gatto L; Hartler J; Thallinger GG; Salek RM; Steinbeck C; Neuhauser N; Cox J; Neumann S; Fan J; Reisinger F; Xu QW; Del Toro N; Pérez-Riverol Y; Ghali F; Bandeira N; Xenarios I; Kohlbacher O; Vizcaíno JA; Hermjakob H
    Mol Cell Proteomics; 2014 Oct; 13(10):2765-75. PubMed ID: 24980485
    [TBL] [Abstract][Full Text] [Related]  

  • 8. qcML: an exchange format for quality control metrics from mass spectrometry experiments.
    Walzer M; Pernas LE; Nasso S; Bittremieux W; Nahnsen S; Kelchtermans P; Pichler P; van den Toorn HW; Staes A; Vandenbussche J; Mazanek M; Taus T; Scheltema RA; Kelstrup CD; Gatto L; van Breukelen B; Aiche S; Valkenborg D; Laukens K; Lilley KS; Olsen JV; Heck AJ; Mechtler K; Aebersold R; Gevaert K; Vizcaíno JA; Hermjakob H; Kohlbacher O; Martens L
    Mol Cell Proteomics; 2014 Aug; 13(8):1905-13. PubMed ID: 24760958
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SPLASH: systematic proteomics laboratory analysis and storage hub.
    Lo SL; You T; Lin Q; Joshi SB; Chung MC; Hew CL
    Proteomics; 2006 Mar; 6(6):1758-69. PubMed ID: 16456885
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML database--Xindice.
    Li F; Li M; Xiao Z; Zhang P; Li J; Chen Z
    BMC Bioinformatics; 2006 Jan; 7():13. PubMed ID: 16403238
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A mass spectrometry proteomics data management platform.
    Sharma V; Eng JK; Maccoss MJ; Riffle M
    Mol Cell Proteomics; 2012 Sep; 11(9):824-31. PubMed ID: 22611296
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MGFp: an open Mascot Generic Format parser library implementation.
    Kirchner M; Steen JA; Hamprecht FA; Steen H
    J Proteome Res; 2010 May; 9(5):2762-3. PubMed ID: 20334363
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Proteomics data exchange and storage: the need for common standards and public repositories.
    Jiménez RC; Vizcaíno JA
    Methods Mol Biol; 2013; 1007():317-33. PubMed ID: 23666733
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.
    Allmer J; Kuhlgert S; Hippler M
    BMC Bioinformatics; 2008 Jul; 9():302. PubMed ID: 18605993
    [TBL] [Abstract][Full Text] [Related]  

  • 15. mz5: space- and time-efficient storage of mass spectrometry data sets.
    Wilhelm M; Kirchner M; Steen JAJ; Steen H
    Mol Cell Proteomics; 2012 Jan; 11(1):O111.011379. PubMed ID: 21960719
    [TBL] [Abstract][Full Text] [Related]  

  • 16. mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.
    Hoffmann N; Rein J; Sachsenberg T; Hartler J; Haug K; Mayer G; Alka O; Dayalan S; Pearce JTM; Rocca-Serra P; Qi D; Eisenacher M; Perez-Riverol Y; Vizcaíno JA; Salek RM; Neumann S; Jones AR
    Anal Chem; 2019 Mar; 91(5):3302-3310. PubMed ID: 30688441
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Numerical compression schemes for proteomics mass spectrometry data.
    Teleman J; Dowsey AW; Gonzalez-Galarza FF; Perkins S; Pratt B; Röst HL; Malmström L; Malmström J; Jones AR; Deutsch EW; Levander F
    Mol Cell Proteomics; 2014 Jun; 13(6):1537-42. PubMed ID: 24677029
    [TBL] [Abstract][Full Text] [Related]  

  • 18. mspire: mass spectrometry proteomics in Ruby.
    Prince JT; Marcotte EM
    Bioinformatics; 2008 Dec; 24(23):2796-7. PubMed ID: 18930952
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ProCon - PROteomics CONversion tool.
    Mayer G; Stephan C; Meyer HE; Kohl M; Marcus K; Eisenacher M
    J Proteomics; 2015 Nov; 129():56-62. PubMed ID: 26182917
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Application of XML database technology to biological pathway datasets.
    Jiang K; Nash C
    Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():4217-20. PubMed ID: 17946612
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.