BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 20718947)

  • 1. Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets.
    Albayrak A; Otu HH; Sezerman UO
    BMC Bioinformatics; 2010 Aug; 11():428. PubMed ID: 20718947
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CLUSS: clustering of protein sequences based on a new similarity measure.
    Kelil A; Wang S; Brzezinski R; Fleury A
    BMC Bioinformatics; 2007 Aug; 8():286. PubMed ID: 17683581
    [TBL] [Abstract][Full Text] [Related]  

  • 3. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Clustering of protein domains for functional and evolutionary studies.
    Goldstein P; Zucko J; Vujaklija D; Krisko A; Hranueli D; Long PF; Etchebest C; Basrak B; Cullum J
    BMC Bioinformatics; 2009 Oct; 10():335. PubMed ID: 19832975
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Automated alphabet reduction for protein datasets.
    Bacardit J; Stout M; Hirst JD; Valencia A; Smith RE; Krasnogor N
    BMC Bioinformatics; 2009 Jan; 10():6. PubMed ID: 19126227
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CLUSS2: an alignment-independent algorithm for clustering protein families with multiple biological functions.
    Kelil A; Wang S; Brzezinski R
    Int J Comput Biol Drug Des; 2008; 1(2):122-40. PubMed ID: 20058485
    [TBL] [Abstract][Full Text] [Related]  

  • 7. High-quality sequence clustering guided by network topology and multiple alignment likelihood.
    Miele V; Penel S; Daubin V; Picard F; Kahn D; Duret L
    Bioinformatics; 2012 Apr; 28(8):1078-85. PubMed ID: 22368255
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mapping sequence to feature vector using numerical representation of codons targeted to amino acids for alignment-free sequence analysis.
    Das JK; Sengupta A; Choudhury PP; Roy S
    Gene; 2021 Jan; 766():145096. PubMed ID: 32919006
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.
    Loewenstein Y; Portugaly E; Fromer M; Linial M
    Bioinformatics; 2008 Jul; 24(13):i41-9. PubMed ID: 18586742
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.
    Pascual-García A; Abia D; Ortiz AR; Bastolla U
    PLoS Comput Biol; 2009 Mar; 5(3):e1000331. PubMed ID: 19325884
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment.
    Peterson EL; Kondev J; Theriot JA; Phillips R
    Bioinformatics; 2009 Jun; 25(11):1356-62. PubMed ID: 19351620
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Towards automatic clustering of protein sequences.
    Yang J; Wang W
    Proc IEEE Comput Soc Bioinform Conf; 2002; 1():175-86. PubMed ID: 15838134
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation and improvements of clustering algorithms for detecting remote homologous protein families.
    Bernardes JS; Vieira FR; Costa LM; Zaverucha G
    BMC Bioinformatics; 2015 Feb; 16():34. PubMed ID: 25651949
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ProClust: improved clustering of protein sequences with an extended graph-based approach.
    Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
    Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
    Pei J; Cai W; Kinch LN; Grishin NV
    Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences.
    Zhang Z; Zhu M; Xie Q; Larkin RM; Shi X; Zheng B
    Brief Bioinform; 2022 Jul; 23(4):. PubMed ID: 35834931
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MACHOS: Markov clusters of homologous subsequences.
    Wong S; Ragan MA
    Bioinformatics; 2008 Jul; 24(13):i77-85. PubMed ID: 18586748
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing.
    Abnousi A; Broschat SL; Kalyanaraman A
    BMC Bioinformatics; 2018 Mar; 19(1):83. PubMed ID: 29506470
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A genetic approach for building different alphabets for peptide and protein classification.
    Nanni L; Lumini A
    BMC Bioinformatics; 2008 Jan; 9():45. PubMed ID: 18218100
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments.
    Tillier ER; Lui TW
    Bioinformatics; 2003 Apr; 19(6):750-5. PubMed ID: 12691987
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.