116 related articles for article (PubMed ID: 20726568)
1. RNA tetraloop folding reveals tension between backbone restraints and molecular interactions.
Mohan S; Hsiao C; Bowman JC; Wartell R; Williams LD
J Am Chem Soc; 2010 Sep; 132(36):12679-89. PubMed ID: 20726568
[TBL] [Abstract][Full Text] [Related]
2. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
Burkard ME; Kierzek R; Turner DH
J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
[TBL] [Abstract][Full Text] [Related]
3. A network of heterogeneous hydrogen bonds in GNRA tetraloops.
Jucker FM; Heus HA; Yip PF; Moors EH; Pardi A
J Mol Biol; 1996 Dec; 264(5):968-80. PubMed ID: 9000624
[TBL] [Abstract][Full Text] [Related]
4. The dynamic structural basis of differential enhancement of conformational stability by 5'- and 3'-dangling ends in RNA.
Liu JD; Zhao L; Xia T
Biochemistry; 2008 Jun; 47(22):5962-75. PubMed ID: 18457418
[TBL] [Abstract][Full Text] [Related]
5. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.
Pley HW; Flaherty KM; McKay DB
Nature; 1994 Nov; 372(6501):111-3. PubMed ID: 7526219
[TBL] [Abstract][Full Text] [Related]
6. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart.
Moody EM; Feerrar JC; Bevilacqua PC
Biochemistry; 2004 Jun; 43(25):7992-8. PubMed ID: 15209494
[TBL] [Abstract][Full Text] [Related]
7. A uniform mechanism correlating dangling-end stabilization and stacking geometry.
Isaksson J; Chattopadhyaya J
Biochemistry; 2005 Apr; 44(14):5390-401. PubMed ID: 15807532
[TBL] [Abstract][Full Text] [Related]
8. Solution structure of an RNA internal loop with three consecutive sheared GA pairs.
Chen G; Znosko BM; Kennedy SD; Krugh TR; Turner DH
Biochemistry; 2005 Mar; 44(8):2845-56. PubMed ID: 15723528
[TBL] [Abstract][Full Text] [Related]
9. The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent.
Heus HA; Wijmenga SS; Hoppe H; Hilbers CW
J Mol Biol; 1997 Aug; 271(1):147-58. PubMed ID: 9300061
[TBL] [Abstract][Full Text] [Related]
10. Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model.
Zacharias M; Sklenar H
J Mol Biol; 1999 Jun; 289(2):261-75. PubMed ID: 10366504
[TBL] [Abstract][Full Text] [Related]
11. Motifs in nucleic acids: molecular mechanics restraints for base pairing and base stacking.
Harvey SC; Wang C; Teletchea S; Lavery R
J Comput Chem; 2003 Jan; 24(1):1-9. PubMed ID: 12483670
[TBL] [Abstract][Full Text] [Related]
12. All-atom Monte Carlo simulation of GCAA RNA folding.
Nivón LG; Shakhnovich EI
J Mol Biol; 2004 Nov; 344(1):29-45. PubMed ID: 15504400
[TBL] [Abstract][Full Text] [Related]
13. An RNA folding motif: GNRA tetraloop-receptor interactions.
Fiore JL; Nesbitt DJ
Q Rev Biophys; 2013 Aug; 46(3):223-64. PubMed ID: 23915736
[TBL] [Abstract][Full Text] [Related]
14. RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop.
Sorin EJ; Engelhardt MA; Herschlag D; Pande VS
J Mol Biol; 2002 Apr; 317(4):493-506. PubMed ID: 11955005
[TBL] [Abstract][Full Text] [Related]
15. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone.
Packer MJ; Hunter CA
J Mol Biol; 1998 Jul; 280(3):407-20. PubMed ID: 9665845
[TBL] [Abstract][Full Text] [Related]
16. Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors.
Blose JM; Proctor DJ; Veeraraghavan N; Misra VK; Bevilacqua PC
J Am Chem Soc; 2009 Jun; 131(24):8474-84. PubMed ID: 19476351
[TBL] [Abstract][Full Text] [Related]
17. Investigating the thermodynamics of UNCG tetraloops using infrared spectroscopy.
Stancik AL; Brauns EB
J Phys Chem B; 2013 Oct; 117(43):13556-60. PubMed ID: 24079463
[TBL] [Abstract][Full Text] [Related]
18. A novel RNA motif based on the structure of unusually stable 2',5'-linked r(UUCG) loops.
Denisov AY; Hannoush RN; Gehring K; Damha MJ
J Am Chem Soc; 2003 Sep; 125(38):11525-31. PubMed ID: 13129354
[TBL] [Abstract][Full Text] [Related]
19. Portability of the GN(R)A hairpin loop motif between RNA and DNA.
Blose JM; Lloyd KP; Bevilacqua PC
Biochemistry; 2009 Sep; 48(37):8787-94. PubMed ID: 19681609
[TBL] [Abstract][Full Text] [Related]
20. Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins.
Thapar R; Denmon AP; Nikonowicz EP
Wiley Interdiscip Rev RNA; 2014; 5(1):49-67. PubMed ID: 24124096
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]