212 related articles for article (PubMed ID: 20804157)
1. Setting anchor in the minor groove: in silico investigation into formamido N-methylpyrrole and N-methylimidazole polyamides bound by cognate DNA sequences.
Collar CJ; Lee M; Wilson WD
J Chem Inf Model; 2010 Sep; 50(9):1611-22. PubMed ID: 20804157
[TBL] [Abstract][Full Text] [Related]
2. Molecular recognition of DNA base pairs by the formamido/pyrrole and formamido/imidazole pairings in stacked polyamides.
Buchmueller KL; Staples AM; Uthe PB; Howard CM; Pacheco KA; Cox KK; Henry JA; Bailey SL; Horick SM; Nguyen B; Wilson WD; Lee M
Nucleic Acids Res; 2005; 33(3):912-21. PubMed ID: 15703305
[TBL] [Abstract][Full Text] [Related]
3. Effects of the N-terminal acylamido group of imidazole- and pyrrole-containing polyamides on DNA sequence specificity and binding affinity.
Westrate L; Mackay H; Brown T; Nguyen B; Kluza J; Wilson WD; Lee M; Hartley JA
Biochemistry; 2009 Jun; 48(24):5679-88. PubMed ID: 19419200
[TBL] [Abstract][Full Text] [Related]
4. Sequence recognition in the minor groove of DNA by covalently linked formamido imidazole-pyrrole-imidazole polyamides: effect of H-pin linkage and linker length on selectivity and affinity.
O'Hare CC; Uthe P; Mackay H; Blackmon K; Jones J; Brown T; Nguyen B; Wilson WD; Lee M; Hartley JA
Biochemistry; 2007 Oct; 46(42):11661-70. PubMed ID: 17910471
[TBL] [Abstract][Full Text] [Related]
5. Physical and structural basis for the strong interactions of the -ImPy- central pairing motif in the polyamide f-ImPyIm.
Buchmueller KL; Bailey SL; Matthews DA; Taherbhai ZT; Register JK; Davis ZS; Bruce CD; O'Hare C; Hartley JA; Lee M
Biochemistry; 2006 Nov; 45(45):13551-65. PubMed ID: 17087509
[TBL] [Abstract][Full Text] [Related]
6. Modifying the N-terminus of polyamides: PyImPyIm has improved sequence specificity over f-ImPyIm.
Brown T; Mackay H; Turlington M; Sutterfield A; Smith T; Sielaff A; Westrate L; Bruce C; Kluza J; O'Hare C; Nguyen B; Wilson WD; Hartley JA; Lee M
Bioorg Med Chem; 2008 May; 16(9):5266-76. PubMed ID: 18353654
[TBL] [Abstract][Full Text] [Related]
7. Extending the language of DNA molecular recognition by polyamides: unexpected influence of imidazole and pyrrole arrangement on binding affinity and specificity.
Buchmueller KL; Staples AM; Howard CM; Horick SM; Uthe PB; Le NM; Cox KK; Nguyen B; Pacheco KA; Wilson WD; Lee M
J Am Chem Soc; 2005 Jan; 127(2):742-50. PubMed ID: 15643900
[TBL] [Abstract][Full Text] [Related]
8. Influence of a terminal formamido group on the sequence recognition of DNA by polyamides.
Lacy ER; Le NM; Price CA; Lee M; Wilson WD
J Am Chem Soc; 2002 Mar; 124(10):2153-63. PubMed ID: 11878969
[TBL] [Abstract][Full Text] [Related]
9. Sequence specific and high affinity recognition of 5'-ACGCGT-3' by rationally designed pyrrole-imidazole H-pin polyamides: thermodynamic and structural studies.
Mackay H; Brown T; Uthe PB; Westrate L; Sielaff A; Jones J; Lajiness JP; Kluza J; O'Hare C; Nguyen B; Davis Z; Bruce C; Wilson WD; Hartley JA; Lee M
Bioorg Med Chem; 2008 Oct; 16(20):9145-53. PubMed ID: 18819814
[TBL] [Abstract][Full Text] [Related]
10. Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove.
Kielkopf CL; Bremer RE; White S; Szewczyk JW; Turner JM; Baird EE; Dervan PB; Rees DC
J Mol Biol; 2000 Jan; 295(3):557-67. PubMed ID: 10623546
[TBL] [Abstract][Full Text] [Related]
11. Effects of the A.T/T.A degeneracy of pyrrole--imidazole polyamide recognition in the minor groove of DNA.
White S; Baird EE; Dervan PB
Biochemistry; 1996 Sep; 35(38):12532-7. PubMed ID: 8823190
[TBL] [Abstract][Full Text] [Related]
12. Dynamic hydrogen bonding and DNA flexibility in minor groove binders: molecular dynamics simulation of the polyamide f-ImPyIm bound to the Mlu1 (MCB) sequence 5'-ACGCGT-3' in 2:1 motif.
Bruce CD; Ferrara MM; Manka JL; Davis ZS; Register J
J Mol Recognit; 2015 May; 28(5):325-37. PubMed ID: 25711379
[TBL] [Abstract][Full Text] [Related]
13. The thermodynamics of polyamide-DNA recognition: hairpin polyamide binding in the minor groove of duplex DNA.
Pilch DS; Poklar N; Baird EE; Dervan PB; Breslauer KJ
Biochemistry; 1999 Feb; 38(7):2143-51. PubMed ID: 10026298
[TBL] [Abstract][Full Text] [Related]
14. Discrimination of hairpin polyamides with an alpha-substituted-gamma-aminobutyric acid as a 5'-TG-3' reader in DNA minor groove.
Zhang W; Bando T; Sugiyama H
J Am Chem Soc; 2006 Jul; 128(27):8766-76. PubMed ID: 16819870
[TBL] [Abstract][Full Text] [Related]
15. Conformational modulation of DNA by polyamide binding: structural effects of f-Im-Py-Im based derivatives on 5'-ACGCGT-3'.
Wang S; Chai Y; Babu B; Satam V; Lee M; David Wilson W
J Mol Recognit; 2013 Aug; 26(8):331-40. PubMed ID: 23784989
[TBL] [Abstract][Full Text] [Related]
16. On the pairing rules for recognition in the minor groove of DNA by pyrrole-imidazole polyamides.
White S; Baird EE; Dervan PB
Chem Biol; 1997 Aug; 4(8):569-78. PubMed ID: 9281524
[TBL] [Abstract][Full Text] [Related]
17. Synthesis and biological properties of sequence-specific DNA-alkylating pyrrole-imidazole polyamides.
Bando T; Sugiyama H
Acc Chem Res; 2006 Dec; 39(12):935-44. PubMed ID: 17176032
[TBL] [Abstract][Full Text] [Related]
18. Analysis of noncovalent complexes between human telomeric DNA and polyamides containing N-methylpyrrole and N-methylimidazole by using electrospray ionization mass spectrometry.
Zhou J; Yuan G
Chemistry; 2005 Feb; 11(4):1157-62. PubMed ID: 15624127
[TBL] [Abstract][Full Text] [Related]
19. Rational design of specific binding hairpin Py-Im polyamides targeting human telomere sequences.
Guo C; Kawamoto Y; Asamitsu S; Sawatani Y; Hashiya K; Bando T; Sugiyama H
Bioorg Med Chem; 2015 Feb; 23(4):855-60. PubMed ID: 25614111
[TBL] [Abstract][Full Text] [Related]
20. Electrospray ionization mass spectrometric analysis of noncovalent complexes between DNA and polyamides containing N-methylpyrrole and N-methylimidazole.
Zhou J; Yuan G
Rapid Commun Mass Spectrom; 2004; 18(13):1519-24. PubMed ID: 15216515
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
