These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 20812907)

  • 1. Generalizing moving averages for tiling arrays using combined p-value statistics.
    Kechris KJ; Biehs B; Kornberg TB
    Stat Appl Genet Mol Biol; 2010; 9(1):Article29. PubMed ID: 20812907
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.
    Du J; Rozowsky JS; Korbel JO; Zhang ZD; Royce TE; Schultz MH; Snyder M; Gerstein M
    Bioinformatics; 2006 Dec; 22(24):3016-24. PubMed ID: 17038339
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An efficient pseudomedian filter for tiling microrrays.
    Royce TE; Carriero NJ; Gerstein MB
    BMC Bioinformatics; 2007 Jun; 8():186. PubMed ID: 17555595
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication.
    Kim Y; Bekiranov S; Lee JK; Park T
    Bioinformatics; 2009 Oct; 25(19):2486-91. PubMed ID: 19667080
    [TBL] [Abstract][Full Text] [Related]  

  • 5. HAT: hypergeometric analysis of tiling-arrays with application to promoter-GeneChip data.
    Taskesen E; Beekman R; de Ridder J; Wouters BJ; Peeters JK; Touw IP; Reinders MJ; Delwel R
    BMC Bioinformatics; 2010 May; 11():275. PubMed ID: 20492700
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Poisson approximation for significance in genome-wide ChIP-chip tiling arrays.
    Zhang Y
    Bioinformatics; 2008 Dec; 24(24):2825-31. PubMed ID: 18953047
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Error-pooling-based statistical methods for identifying novel temporal replication profiles of human chromosomes observed by DNA tiling arrays.
    Park T; Kim Y; Bekiranov S; Lee JK
    Nucleic Acids Res; 2007; 35(9):e69. PubMed ID: 17430969
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Design of tiling arrays and their application to bacterial transcriptome analysis.
    Akama T; Nakamura K; Tanoue A; Suzuki K
    Methods Mol Biol; 2013; 1067():23-34. PubMed ID: 23975783
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.
    Emanuelsson O; Nagalakshmi U; Zheng D; Rozowsky JS; Urban AE; Du J; Lian Z; Stolc V; Weissman S; Snyder M; Gerstein MB
    Genome Res; 2007 Jun; 17(6):886-97. PubMed ID: 17119069
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Transcript profiling in Arabidopsis with genome tiling microarrays.
    Coman D; Gruissem W; Hennig L
    Methods Mol Biol; 2013; 1067():35-49. PubMed ID: 23975784
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Differential analysis for high density tiling microarray data.
    Ghosh S; Hirsch HA; Sekinger EA; Kapranov P; Struhl K; Gingeras TR
    BMC Bioinformatics; 2007 Sep; 8():359. PubMed ID: 17892592
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genome-wide transcriptome analysis in yeast using high-density tiling arrays.
    David L; Clauder-Münster S; Steinmetz LM
    Methods Mol Biol; 2011; 759():107-23. PubMed ID: 21863484
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.
    Scacheri PC; Crawford GE; Davis S
    Methods Enzymol; 2006; 411():270-82. PubMed ID: 16939795
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays.
    Agarwal A; Koppstein D; Rozowsky J; Sboner A; Habegger L; Hillier LW; Sasidharan R; Reinke V; Waterston RH; Gerstein M
    BMC Genomics; 2010 Jun; 11():383. PubMed ID: 20565764
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.
    Naouar N; Vandepoele K; Lammens T; Casneuf T; Zeller G; van Hummelen P; Weigel D; Rätsch G; Inzé D; Kuiper M; De Veylder L; Vuylsteke M
    Plant J; 2009 Jan; 57(1):184-94. PubMed ID: 18764924
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A hidden Markov model approach for determining expression from genomic tiling micro arrays.
    Munch K; Gardner PP; Arctander P; Krogh A
    BMC Bioinformatics; 2006 May; 7():239. PubMed ID: 16672042
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HAT: a novel statistical approach to discover functional regions in the genome.
    Taskesen E; Wouters B; Delwel R
    Methods Mol Biol; 2013; 1067():125-41. PubMed ID: 23975790
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Efficient oligonucleotide probe selection for pan-genomic tiling arrays.
    Phillippy AM; Deng X; Zhang W; Salzberg SL
    BMC Bioinformatics; 2009 Sep; 10():293. PubMed ID: 19758451
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Multivariate segmentation in the analysis of transcription tiling array data.
    Piccolboni A
    J Comput Biol; 2008 Sep; 15(7):845-56. PubMed ID: 18707537
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Assessing the need for sequence-based normalization in tiling microarray experiments.
    Royce TE; Rozowsky JS; Gerstein MB
    Bioinformatics; 2007 Apr; 23(8):988-97. PubMed ID: 17387113
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.