These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. Laurie AT; Jackson RM Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681 [TBL] [Abstract][Full Text] [Related]
7. A new test set for validating predictions of protein-ligand interaction. Nissink JW; Murray C; Hartshorn M; Verdonk ML; Cole JC; Taylor R Proteins; 2002 Dec; 49(4):457-71. PubMed ID: 12402356 [TBL] [Abstract][Full Text] [Related]
8. Locating and characterizing binding sites on proteins. Mattos C; Ringe D Nat Biotechnol; 1996 May; 14(5):595-9. PubMed ID: 9630949 [TBL] [Abstract][Full Text] [Related]
9. Exploring protein-ligand recognition with Binding MOAD. Smith RD; Hu L; Falkner JA; Benson ML; Nerothin JP; Carlson HA J Mol Graph Model; 2006 May; 24(6):414-25. PubMed ID: 16168689 [TBL] [Abstract][Full Text] [Related]
10. Connectivity and binding-site recognition: applications relevant to drug design. Illingworth CJ; Scott PD; Parkes KE; Snell CR; Campbell MP; Reynolds CA J Comput Chem; 2010 Nov; 31(15):2677-88. PubMed ID: 20839295 [TBL] [Abstract][Full Text] [Related]
12. Binding site detection and druggability index from first principles. Seco J; Luque FJ; Barril X J Med Chem; 2009 Apr; 52(8):2363-71. PubMed ID: 19296650 [TBL] [Abstract][Full Text] [Related]
13. Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity. Kupas K; Ultsch A; Klebe G Proteins; 2008 May; 71(3):1288-306. PubMed ID: 18041748 [TBL] [Abstract][Full Text] [Related]
14. Molecular surface generation using a variable-radius solvent probe. Bhat S; Purisima EO Proteins; 2006 Jan; 62(1):244-61. PubMed ID: 16287115 [TBL] [Abstract][Full Text] [Related]
15. Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere. Yu J; Zhou Y; Tanaka I; Yao M Bioinformatics; 2010 Jan; 26(1):46-52. PubMed ID: 19846440 [TBL] [Abstract][Full Text] [Related]
16. Structural and functional characterization of binding sites in metallocarboxypeptidases based on Optimal Docking Area analysis. Fernández D; Vendrell J; Avilés FX; Fernández-Recio J Proteins; 2007 Jul; 68(1):131-44. PubMed ID: 17407161 [TBL] [Abstract][Full Text] [Related]
17. Optimal protein-RNA area, OPRA: a propensity-based method to identify RNA-binding sites on proteins. Pérez-Cano L; Fernández-Recio J Proteins; 2010 Jan; 78(1):25-35. PubMed ID: 19714772 [TBL] [Abstract][Full Text] [Related]
18. Binding response: a descriptor for selecting ligand binding site on protein surfaces. Zhong S; MacKerell AD J Chem Inf Model; 2007; 47(6):2303-15. PubMed ID: 17900106 [TBL] [Abstract][Full Text] [Related]
19. Docking without docking: ISEARCH--prediction of interactions using known interfaces. Günther S; May P; Hoppe A; Frömmel C; Preissner R Proteins; 2007 Dec; 69(4):839-44. PubMed ID: 17803236 [TBL] [Abstract][Full Text] [Related]
20. Comprehensive identification of "druggable" protein ligand binding sites. An J; Totrov M; Abagyan R Genome Inform; 2004; 15(2):31-41. PubMed ID: 15706489 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]