These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 20823307)

  • 21. RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules.
    Garcia-Martin JA; Dotu I; Clote P
    Nucleic Acids Res; 2015 Jul; 43(W1):W513-21. PubMed ID: 26019176
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Rose: generating sequence families.
    Stoye J; Evers D; Meyer F
    Bioinformatics; 1998; 14(2):157-63. PubMed ID: 9545448
    [TBL] [Abstract][Full Text] [Related]  

  • 23. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Accelerated probabilistic inference of RNA structure evolution.
    Holmes I
    BMC Bioinformatics; 2005 Mar; 6():73. PubMed ID: 15790387
    [TBL] [Abstract][Full Text] [Related]  

  • 25. RR3DD: an RNA global structure-based RNA three-dimensional structural classification database.
    Hong X; Zheng J; Xie J; Tong X; Liu X; Song Q; Liu S; Liu S
    RNA Biol; 2021 Nov; 18(sup2):738-746. PubMed ID: 34663179
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Rfold: an exact algorithm for computing local base pairing probabilities.
    Kiryu H; Kin T; Asai K
    Bioinformatics; 2008 Feb; 24(3):367-73. PubMed ID: 18056736
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Annotating non-coding RNAs with Rfam.
    Griffiths-Jones S
    Curr Protoc Bioinformatics; 2005 Apr; Chapter 12():12.5.1-12.5.12. PubMed ID: 18428745
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families.
    Barquist L; Burge SW; Gardner PP
    Curr Protoc Bioinformatics; 2016 Jun; 54():12.13.1-12.13.25. PubMed ID: 27322404
    [TBL] [Abstract][Full Text] [Related]  

  • 29. RNAz 2.0: improved noncoding RNA detection.
    Gruber AR; Findeiß S; Washietl S; Hofacker IL; Stadler PF
    Pac Symp Biocomput; 2010; ():69-79. PubMed ID: 19908359
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Clustering of proximal sequence space for the identification of protein families.
    Abascal F; Valencia A
    Bioinformatics; 2002 Jul; 18(7):908-21. PubMed ID: 12117788
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Reconstruction of ancestral RNA sequences under multiple structural constraints.
    Tremblay-Savard O; Reinharz V; Waldispühl J
    BMC Genomics; 2016 Nov; 17(Suppl 10):862. PubMed ID: 28185557
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Automated identification of RNA 3D modules with discriminative power in RNA structural alignments.
    Theis C; Höner Zu Siederdissen C; Hofacker IL; Gorodkin J
    Nucleic Acids Res; 2013 Dec; 41(22):9999-10009. PubMed ID: 24005040
    [TBL] [Abstract][Full Text] [Related]  

  • 33. CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments.
    Ekiz HA; Conley CJ; Stephens WZ; O'Connell RM
    BMC Bioinformatics; 2020 May; 21(1):191. PubMed ID: 32414321
    [TBL] [Abstract][Full Text] [Related]  

  • 34. D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences.
    Dupont MJ; Major F
    J Mol Biol; 2023 Aug; 435(15):168181. PubMed ID: 37468182
    [TBL] [Abstract][Full Text] [Related]  

  • 35. ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.
    Rosenfeld JA; Sarkar IN; Planet PJ; Figurski DH; DeSalle R
    Bioinformatics; 2004 Dec; 20(18):3462-5. PubMed ID: 15271781
    [TBL] [Abstract][Full Text] [Related]  

  • 36. RNAblueprint: flexible multiple target nucleic acid sequence design.
    Hammer S; Tschiatschek B; Flamm C; Hofacker IL; Findeiß S
    Bioinformatics; 2017 Sep; 33(18):2850-2858. PubMed ID: 28449031
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SHARAKU: an algorithm for aligning and clustering read mapping profiles of deep sequencing in non-coding RNA processing.
    Tsuchiya M; Amano K; Abe M; Seki M; Hase S; Sato K; Sakakibara Y
    Bioinformatics; 2016 Jun; 32(12):i369-i377. PubMed ID: 27307639
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Multiple sequence alignment using partial order graphs.
    Lee C; Grasso C; Sharlow MF
    Bioinformatics; 2002 Mar; 18(3):452-64. PubMed ID: 11934745
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Calibrating E-values for hidden Markov models using reverse-sequence null models.
    Karplus K; Karchin R; Shackelford G; Hughey R
    Bioinformatics; 2005 Nov; 21(22):4107-15. PubMed ID: 16123115
    [TBL] [Abstract][Full Text] [Related]  

  • 40. The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
    Gruber AR; Neuböck R; Hofacker IL; Washietl S
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W335-8. PubMed ID: 17452347
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.