These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Sigma: multiple alignment of weakly-conserved non-coding DNA sequence. Siddharthan R BMC Bioinformatics; 2006 Mar; 7():143. PubMed ID: 16542424 [TBL] [Abstract][Full Text] [Related]
4. GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags. Castrignanò T; De Meo PD; Grillo G; Liuni S; Mignone F; Talamo IG; Pesole G Bioinformatics; 2006 Feb; 22(4):497-9. PubMed ID: 16267081 [TBL] [Abstract][Full Text] [Related]
5. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences. Bininda-Emonds OR BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769 [TBL] [Abstract][Full Text] [Related]
7. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads. Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610 [TBL] [Abstract][Full Text] [Related]
8. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]. Zhang DL; Ji L; Li YD Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601 [TBL] [Abstract][Full Text] [Related]
12. Annotation of metagenome short reads using proxygenes. Dalevi D; Ivanova NN; Mavromatis K; Hooper SD; Szeto E; Hugenholtz P; Kyrpides NC; Markowitz VM Bioinformatics; 2008 Aug; 24(16):i7-13. PubMed ID: 18689842 [TBL] [Abstract][Full Text] [Related]
13. Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. Szczepanowski R; Bekel T; Goesmann A; Krause L; Krömeke H; Kaiser O; Eichler W; Pühler A; Schlüter A J Biotechnol; 2008 Aug; 136(1-2):54-64. PubMed ID: 18586057 [TBL] [Abstract][Full Text] [Related]
14. CONSORF: a consensus prediction system for prokaryotic coding sequences. Kang S; Yang SJ; Kim S; Bhak J Bioinformatics; 2007 Nov; 23(22):3088-90. PubMed ID: 17977885 [TBL] [Abstract][Full Text] [Related]
15. A tool for analyzing and annotating genomic sequences. Huang X; Adams MD; Zhou H; Kerlavage AR Genomics; 1997 Nov; 46(1):37-45. PubMed ID: 9403056 [TBL] [Abstract][Full Text] [Related]
17. Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring. Usuka J; Brendel V J Mol Biol; 2000 Apr; 297(5):1075-85. PubMed ID: 10764574 [TBL] [Abstract][Full Text] [Related]
18. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Parra G; Bradnam K; Korf I Bioinformatics; 2007 May; 23(9):1061-7. PubMed ID: 17332020 [TBL] [Abstract][Full Text] [Related]
19. CHOP: visualization of 'wobbling' and isolation of highly conserved regions from aligned DNA sequences. Ohtsuka M; Horiuchi S; Kulski JK; Kimura M; Inoko H Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W55-8. PubMed ID: 15215350 [TBL] [Abstract][Full Text] [Related]
20. Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology. Cheung F; Haas BJ; Goldberg SM; May GD; Xiao Y; Town CD BMC Genomics; 2006 Oct; 7():272. PubMed ID: 17062153 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]