BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

168 related articles for article (PubMed ID: 20838975)

  • 1. Classification of chemical reactions and chemoinformatic processing of enzymatic transformations.
    Latino DA; Aires-de-Sousa J
    Methods Mol Biol; 2011; 672():325-40. PubMed ID: 20838975
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps.
    Latino DA; Zhang QY; Aires-de-Sousa J
    Bioinformatics; 2008 Oct; 24(19):2236-44. PubMed ID: 18676416
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions.
    Kotera M; Okuno Y; Hattori M; Goto S; Kanehisa M
    J Am Chem Soc; 2004 Dec; 126(50):16487-98. PubMed ID: 15600352
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Assignment of EC numbers to enzymatic reactions with MOLMAP reaction descriptors and random forests.
    Latino DA; Aires-de-Sousa J
    J Chem Inf Model; 2009 Jul; 49(7):1839-46. PubMed ID: 19588957
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Explorations into Chemical Reactions and Biochemical Pathways.
    Gasteiger J
    Mol Inform; 2016 Dec; 35(11-12):588-592. PubMed ID: 27870242
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Knowledge representation in metabolic pathway databases.
    Stobbe MD; Jansen GA; Moerland PD; van Kampen AH
    Brief Bioinform; 2014 May; 15(3):455-70. PubMed ID: 23202525
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Automatic Perception of Chemical Similarities Between Metabolic Pathways.
    Latino DA; Aires-de-Sousa J
    Mol Inform; 2012 Feb; 31(2):135-44. PubMed ID: 27476958
    [TBL] [Abstract][Full Text] [Related]  

  • 8. METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.
    Gille C; Hoffmann S; Holzhütter HG
    BMC Syst Biol; 2007 Jan; 1():5. PubMed ID: 17408512
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automatic assignment of reaction operators to enzymatic reactions.
    Leber M; Egelhofer V; Schomburg I; Schomburg D
    Bioinformatics; 2009 Dec; 25(23):3135-42. PubMed ID: 19783831
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites.
    Hadadi N; Hafner J; Soh KC; Hatzimanikatis V
    Biotechnol J; 2017 Jan; 12(1):. PubMed ID: 27897385
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-scale metabolic models: reconstruction and analysis.
    Baart GJ; Martens DE
    Methods Mol Biol; 2012; 799():107-26. PubMed ID: 21993642
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of reaction organization patterns that naturally cluster enzymatic transformations.
    Vazquez-Hernandez C; Loza A; Peguero-Sanchez E; Segovia L; Gutierrez-Rios RM
    BMC Syst Biol; 2018 May; 12(1):63. PubMed ID: 29848336
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rhea--a manually curated resource of biochemical reactions.
    Alcántara R; Axelsen KB; Morgat A; Belda E; Coudert E; Bridge A; Cao H; de Matos P; Ennis M; Turner S; Owen G; Bougueleret L; Xenarios I; Steinbeck C
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D754-60. PubMed ID: 22135291
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Investigations of enzyme-catalyzed reactions based on physicochemical descriptors applied to hydrolases.
    Sacher O; Reitz M; Gasteiger J
    J Chem Inf Model; 2009 Jun; 49(6):1525-34. PubMed ID: 19445497
    [TBL] [Abstract][Full Text] [Related]  

  • 15. From metabolic reactions to networks and pathways.
    Arita M
    Methods Mol Biol; 2012; 804():93-106. PubMed ID: 22144150
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Elucidation of metabolic pathways from enzyme classification data.
    McDonald AG; Tipton KF
    Methods Mol Biol; 2014; 1083():173-86. PubMed ID: 24218216
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Universal scaling across biochemical networks on Earth.
    Kim H; Smith HB; Mathis C; Raymond J; Walker SI
    Sci Adv; 2019 Jan; 5(1):eaau0149. PubMed ID: 30746442
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.
    Stelzer M; Sun J; Kamphans T; Fekete SP; Zeng AP
    Integr Biol (Camb); 2011 Nov; 3(11):1071-86. PubMed ID: 21952610
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MetaCyc: a multiorganism database of metabolic pathways and enzymes.
    Krieger CJ; Zhang P; Mueller LA; Wang A; Paley S; Arnaud M; Pick J; Rhee SY; Karp PD
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D438-42. PubMed ID: 14681452
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Automatic assignment of EC numbers.
    Egelhofer V; Schomburg I; Schomburg D
    PLoS Comput Biol; 2010 Jan; 6(1):e1000661. PubMed ID: 20126531
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.