BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

658 related articles for article (PubMed ID: 20839234)

  • 1. Blind predictions of protein interfaces by docking calculations in CAPRI.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3085-95. PubMed ID: 20839234
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF; Wodak SJ
    Proteins; 2010 Nov; 78(15):3073-84. PubMed ID: 20806235
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.
    de Vries SJ; Melquiond AS; Kastritis PL; Karaca E; Bordogna A; van Dijk M; Rodrigues JP; Bonvin AM
    Proteins; 2010 Nov; 78(15):3242-9. PubMed ID: 20718048
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R; Leplae R; Lensink MF; Wodak SJ
    Proteins; 2005 Aug; 60(2):150-69. PubMed ID: 15981261
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CAPRI targets T29-T42: proving ground for new docking procedures.
    Eisenstein M; Ben-Shimon A; Frankenstein Z; Kowalsman N
    Proteins; 2010 Nov; 78(15):3174-81. PubMed ID: 20607697
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Classification of protein complexes based on docking difficulty.
    Vajda S
    Proteins; 2005 Aug; 60(2):176-80. PubMed ID: 15981248
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring.
    Gong X; Wang P; Yang F; Chang S; Liu B; He H; Cao L; Xu X; Li C; Chen W; Wang C
    Proteins; 2010 Nov; 78(15):3150-5. PubMed ID: 20806233
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.
    Carter P; Lesk VI; Islam SA; Sternberg MJ
    Proteins; 2005 Aug; 60(2):281-8. PubMed ID: 15981271
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
    Wiehe K; Pierce B; Tong WW; Hwang H; Mintseris J; Weng Z
    Proteins; 2007 Dec; 69(4):719-25. PubMed ID: 17803212
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR; Vajda S; Camacho CJ
    Proteins; 2005 Aug; 60(2):239-44. PubMed ID: 15981265
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Modeling oligomers with Cn or Dn symmetry: application to CAPRI target 10.
    Berchanski A; Segal D; Eisenstein M
    Proteins; 2005 Aug; 60(2):202-6. PubMed ID: 15981250
    [TBL] [Abstract][Full Text] [Related]  

  • 14. How different from random are docking predictions when ranked by scoring functions?
    Feliu E; Oliva B
    Proteins; 2010 Dec; 78(16):3376-85. PubMed ID: 20848549
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein-protein docking: progress in CAPRI rounds 6-12 using a combination of methods: the introduction of steered solvated molecular dynamics.
    Heifetz A; Pal S; Smith GR
    Proteins; 2007 Dec; 69(4):816-22. PubMed ID: 17803214
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prediction and scoring of docking poses with pyDock.
    Grosdidier S; Pons C; Solernou A; Fernández-Recio J
    Proteins; 2007 Dec; 69(4):852-8. PubMed ID: 17876821
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Development and testing of an automated approach to protein docking.
    Tovchigrechko A; Vakser IA
    Proteins; 2005 Aug; 60(2):296-301. PubMed ID: 15981259
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein-protein docking tested in blind predictions: the CAPRI experiment.
    Janin J
    Mol Biosyst; 2010 Dec; 6(12):2351-62. PubMed ID: 20725658
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ReplicOpter: a replicate optimizer for flexible docking.
    Demerdash ON; Buyan A; Mitchell JC
    Proteins; 2010 Nov; 78(15):3156-65. PubMed ID: 20715288
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.
    Wiehe K; Pierce B; Mintseris J; Tong WW; Anderson R; Chen R; Weng Z
    Proteins; 2005 Aug; 60(2):207-13. PubMed ID: 15981263
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 33.