212 related articles for article (PubMed ID: 20839295)
1. Connectivity and binding-site recognition: applications relevant to drug design.
Illingworth CJ; Scott PD; Parkes KE; Snell CR; Campbell MP; Reynolds CA
J Comput Chem; 2010 Nov; 31(15):2677-88. PubMed ID: 20839295
[TBL] [Abstract][Full Text] [Related]
2. Comprehensive identification of "druggable" protein ligand binding sites.
An J; Totrov M; Abagyan R
Genome Inform; 2004; 15(2):31-41. PubMed ID: 15706489
[TBL] [Abstract][Full Text] [Related]
3. Knowledge-based scoring functions in drug design: 3. A two-dimensional knowledge-based hydrogen-bonding potential for the prediction of protein-ligand interactions.
Zheng M; Xiong B; Luo C; Li S; Liu X; Shen Q; Li J; Zhu W; Luo X; Jiang H
J Chem Inf Model; 2011 Nov; 51(11):2994-3004. PubMed ID: 21999432
[TBL] [Abstract][Full Text] [Related]
4. A new test set for validating predictions of protein-ligand interaction.
Nissink JW; Murray C; Hartshorn M; Verdonk ML; Cole JC; Taylor R
Proteins; 2002 Dec; 49(4):457-71. PubMed ID: 12402356
[TBL] [Abstract][Full Text] [Related]
5. FlexE: efficient molecular docking considering protein structure variations.
Claussen H; Buning C; Rarey M; Lengauer T
J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
[TBL] [Abstract][Full Text] [Related]
6. SuperStar: improved knowledge-based interaction fields for protein binding sites.
Verdonk ML; Cole JC; Watson P; Gillet V; Willett P
J Mol Biol; 2001 Mar; 307(3):841-59. PubMed ID: 11273705
[TBL] [Abstract][Full Text] [Related]
7. A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance.
Perola E; Walters WP; Charifson PS
Proteins; 2004 Aug; 56(2):235-49. PubMed ID: 15211508
[TBL] [Abstract][Full Text] [Related]
8. Computational tools for the analysis and visualization of multiple protein-ligand complexes.
O'Brien SE; Brown DG; Mills JE; Phillips C; Morris G
J Mol Graph Model; 2005 Dec; 24(3):186-94. PubMed ID: 16169759
[TBL] [Abstract][Full Text] [Related]
9. Locating and characterizing binding sites on proteins.
Mattos C; Ringe D
Nat Biotechnol; 1996 May; 14(5):595-9. PubMed ID: 9630949
[TBL] [Abstract][Full Text] [Related]
10. A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.
Amini A; Shrimpton PJ; Muggleton SH; Sternberg MJ
Proteins; 2007 Dec; 69(4):823-31. PubMed ID: 17910057
[TBL] [Abstract][Full Text] [Related]
11. ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
Neuvirth H; Raz R; Schreiber G
J Mol Biol; 2004 Apr; 338(1):181-99. PubMed ID: 15050833
[TBL] [Abstract][Full Text] [Related]
12. Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures.
Strömbergsson H; Kryshtafovych A; Prusis P; Fidelis K; Wikberg JE; Komorowski J; Hvidsten TR
Proteins; 2006 Nov; 65(3):568-79. PubMed ID: 16948162
[TBL] [Abstract][Full Text] [Related]
13. The use of protein-ligand interaction fingerprints in docking.
Brewerton SC
Curr Opin Drug Discov Devel; 2008 May; 11(3):356-64. PubMed ID: 18428089
[TBL] [Abstract][Full Text] [Related]
14. CRK: an evolutionary approach for distinguishing biologically relevant interfaces from crystal contacts.
Schärer MA; Grütter MG; Capitani G
Proteins; 2010 Sep; 78(12):2707-13. PubMed ID: 20589644
[TBL] [Abstract][Full Text] [Related]
15. Domain-based small molecule binding site annotation.
Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
[TBL] [Abstract][Full Text] [Related]
16. Quantum chemical associations ligand-residue: their role to predict flavonoid binding sites in proteins.
Rolo-Naranjo A; Codorniu-Hernández E; Ferro N
J Chem Inf Model; 2010 May; 50(5):924-33. PubMed ID: 20373791
[TBL] [Abstract][Full Text] [Related]
17. Binding response: a descriptor for selecting ligand binding site on protein surfaces.
Zhong S; MacKerell AD
J Chem Inf Model; 2007; 47(6):2303-15. PubMed ID: 17900106
[TBL] [Abstract][Full Text] [Related]
18. A method for localizing ligand binding pockets in protein structures.
Glaser F; Morris RJ; Najmanovich RJ; Laskowski RA; Thornton JM
Proteins; 2006 Feb; 62(2):479-88. PubMed ID: 16304646
[TBL] [Abstract][Full Text] [Related]
19. Optimal protein-RNA area, OPRA: a propensity-based method to identify RNA-binding sites on proteins.
Pérez-Cano L; Fernández-Recio J
Proteins; 2010 Jan; 78(1):25-35. PubMed ID: 19714772
[TBL] [Abstract][Full Text] [Related]
20. Form follows function: shape analysis of protein cavities for receptor-based drug design.
Weisel M; Proschak E; Kriegl JM; Schneider G
Proteomics; 2009 Jan; 9(2):451-9. PubMed ID: 19142949
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]