BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

193 related articles for article (PubMed ID: 20849192)

  • 21. Sampling the equilibrium kinetic network of Trp-cage in explicit solvent.
    Du W; Bolhuis PG
    J Chem Phys; 2014 May; 140(19):195102. PubMed ID: 24852564
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations.
    Li A; Daggett V
    J Mol Biol; 1996 Mar; 257(2):412-29. PubMed ID: 8609633
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Thermal unfolding simulations of a multimeric protein--transition state and unfolding pathways.
    Duan J; Nilsson L
    Proteins; 2005 May; 59(2):170-82. PubMed ID: 15723359
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC; Lee MS; Olson MA
    J Phys Chem B; 2008 Nov; 112(47):15064-73. PubMed ID: 18959439
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Ratcheted molecular-dynamics simulations identify efficiently the transition state of protein folding.
    Tiana G; Camilloni C
    J Chem Phys; 2012 Dec; 137(23):235101. PubMed ID: 23267502
    [TBL] [Abstract][Full Text] [Related]  

  • 26. The equilibrium properties and folding kinetics of an all-atom Go model of the Trp-cage.
    Linhananta A; Boer J; MacKay I
    J Chem Phys; 2005 Mar; 122(11):114901. PubMed ID: 15836251
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Effects of a mutation on the folding mechanism of a beta-hairpin.
    Juraszek J; Bolhuis PG
    J Phys Chem B; 2009 Dec; 113(50):16184-96. PubMed ID: 19924848
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Structure of the transition state for folding of a protein derived from experiment and simulation.
    Daggett V; Li A; Itzhaki LS; Otzen DE; Fersht AR
    J Mol Biol; 1996 Mar; 257(2):430-40. PubMed ID: 8609634
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Conformational dynamics of the trp-cage miniprotein at its folding temperature.
    Hałabis A; Żmudzińska W; Liwo A; Ołdziej S
    J Phys Chem B; 2012 Jun; 116(23):6898-907. PubMed ID: 22497240
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Is protein unfolding the reverse of protein folding? A lattice simulation analysis.
    Dinner AR; Karplus M
    J Mol Biol; 1999 Sep; 292(2):403-19. PubMed ID: 10493884
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.
    Seibert MM; Patriksson A; Hess B; van der Spoel D
    J Mol Biol; 2005 Nov; 354(1):173-83. PubMed ID: 16236315
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Multiscale investigation of chemical interference in proteins.
    Samiotakis A; Homouz D; Cheung MS
    J Chem Phys; 2010 May; 132(17):175101. PubMed ID: 20459186
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Quantitative analysis of Poisson-Boltzmann implicit solvent in molecular dynamics.
    Wang J; Tan C; Chanco E; Luo R
    Phys Chem Chem Phys; 2010 Feb; 12(5):1194-202. PubMed ID: 20094685
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Fluorescence probe of Trp-cage protein conformation in solution and in gas phase.
    Iavarone AT; Patriksson A; van der Spoel D; Parks JH
    J Am Chem Soc; 2007 May; 129(21):6726-35. PubMed ID: 17487969
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Ab initio folding simulation of Trpcage by replica exchange with hybrid Hamiltonian.
    Xu W; Mu Y
    Biophys Chem; 2008 Oct; 137(2-3):116-25. PubMed ID: 18775599
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Sampling the multiple folding mechanisms of Trp-cage in explicit solvent.
    Juraszek J; Bolhuis PG
    Proc Natl Acad Sci U S A; 2006 Oct; 103(43):15859-64. PubMed ID: 17035504
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Towards a consistent modeling of protein thermodynamic and kinetic cooperativity: how applicable is the transition state picture to folding and unfolding?
    Kaya H; Chan HS
    J Mol Biol; 2002 Jan; 315(4):899-909. PubMed ID: 11812156
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism.
    Klimov DK; Thirumalai D
    J Mol Biol; 1998 Sep; 282(2):471-92. PubMed ID: 9735420
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Estimating kinetic rates from accelerated molecular dynamics simulations: alanine dipeptide in explicit solvent as a case study.
    de Oliveira CA; Hamelberg D; McCammon JA
    J Chem Phys; 2007 Nov; 127(17):175105. PubMed ID: 17994855
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Mapping the interactions present in the transition state for unfolding/folding of FKBP12.
    Fulton KF; Main ER; Daggett V; Jackson SE
    J Mol Biol; 1999 Aug; 291(2):445-61. PubMed ID: 10438631
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.