BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

77 related articles for article (PubMed ID: 20853307)

  • 1. Modeling and predicting interactions between the human amphiphysin SH3 domains and their peptide ligands based on amino acid information.
    Cai J; Ou R; Xu YS; Yang L; Lin Z; Shu M
    J Pept Sci; 2010 Nov; 16(11):627-32. PubMed ID: 20853307
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Factor analysis scales of generalized amino acid information as applied in predicting interactions between the human amphiphysin-1 SH3 domains and their peptide ligands.
    Liang G; Chen G; Niu W; Li Z
    Chem Biol Drug Des; 2008 Apr; 71(4):345-51. PubMed ID: 18318694
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling and prediction of binding affinities between the human amphiphysin SH3 domain and its peptide ligands using genetic algorithm-Gaussian processes.
    Zhou P; Tian F; Chen X; Shang Z
    Biopolymers; 2008; 90(6):792-802. PubMed ID: 18814309
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prediction of binding affinities between the human amphiphysin-1 SH3 domain and its peptide ligands using homology modeling, molecular dynamics and molecular field analysis.
    Hou T; McLaughlin W; Lu B; Chen K; Wang W
    J Proteome Res; 2006 Jan; 5(1):32-43. PubMed ID: 16396493
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Toward quantitative characterization of the binding profile between the human amphiphysin-1 SH3 domain and its peptide ligands.
    He P; Wu W; Wang HD; Yang K; Liao KL; Zhang W
    Amino Acids; 2010 Apr; 38(4):1209-18. PubMed ID: 19669081
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring the activity space of peptides binding to diverse SH3 domains using principal property descriptors derived from amino acid rotamers.
    He P; Wu W; Yang K; Jing T; Liao KL; Zhang W; Wang HD; Hua X
    Biopolymers; 2011; 96(3):288-301. PubMed ID: 20690173
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain.
    Hou T; Zhang W; Case DA; Wang W
    J Mol Biol; 2008 Feb; 376(4):1201-14. PubMed ID: 18206907
    [TBL] [Abstract][Full Text] [Related]  

  • 8. In silico quantitative prediction of peptides binding affinity to human MHC molecule: an intuitive quantitative structure-activity relationship approach.
    Tian F; Yang L; Lv F; Yang Q; Zhou P
    Amino Acids; 2009 Mar; 36(3):535-54. PubMed ID: 18575802
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Applying chemometrics approaches to model and predict the binding affinities between the human amphiphysin SH3 domain and its peptide ligands.
    Liu L; He D; Yang S; Xu Y
    Protein Pept Lett; 2010 Feb; 17(2):246-53. PubMed ID: 20214647
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Crystal structure of the abl-SH3 domain complexed with a designed high-affinity peptide ligand: implications for SH3-ligand interactions.
    Pisabarro MT; Serrano L; Wilmanns M
    J Mol Biol; 1998 Aug; 281(3):513-21. PubMed ID: 9698566
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The identification of conserved interactions within the SH3 domain by alignment of sequences and structures.
    Larson SM; Davidson AR
    Protein Sci; 2000 Nov; 9(11):2170-80. PubMed ID: 11152127
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.
    Brannetti B; Via A; Cestra G; Cesareni G; Helmer-Citterich M
    J Mol Biol; 2000 Apr; 298(2):313-28. PubMed ID: 10764600
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structure-based prediction of the Saccharomyces cerevisiae SH3-ligand interactions.
    Fernandez-Ballester G; Beltrao P; Gonzalez JM; Song YH; Wilmanns M; Valencia A; Serrano L
    J Mol Biol; 2009 May; 388(4):902-16. PubMed ID: 19324052
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Binding of the proline-rich segment of myelin basic protein to SH3 domains: spectroscopic, microarray, and modeling studies of ligand conformation and effects of posttranslational modifications.
    Polverini E; Rangaraj G; Libich DS; Boggs JM; Harauz G
    Biochemistry; 2008 Jan; 47(1):267-82. PubMed ID: 18067320
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Predicting the binding affinity of epitope-peptides with HLA-A*0201 by encoding atom-pair non-covalent interaction information between receptor and ligands.
    Hu L; Ai Z; Liu P; Xiong Q; Min M; Lan C; Wang J; Fan L; Chen D
    Chem Biol Drug Des; 2010 Jun; 75(6):597-606. PubMed ID: 20565476
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SH3 domains and drug design: ligands, structure, and biological function.
    Dalgarno DC; Botfield MC; Rickles RJ
    Biopolymers; 1997; 43(5):383-400. PubMed ID: 9566119
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Analysis of peptide-protein binding using amino acid descriptors: prediction and experimental verification for human histocompatibility complex HLA-A0201.
    Guan P; Doytchinova IA; Walshe VA; Borrow P; Flower DR
    J Med Chem; 2005 Nov; 48(23):7418-25. PubMed ID: 16279801
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ligand-induced strain in hydrogen bonds of the c-Src SH3 domain detected by NMR.
    Cordier F; Wang C; Grzesiek S; Nicholson LK
    J Mol Biol; 2000 Dec; 304(4):497-505. PubMed ID: 11099375
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A set of new amino acid descriptors applied in prediction of MHC class I binding peptides.
    Liang G; Yang L; Chen Z; Mei H; Shu M; Li Z
    Eur J Med Chem; 2009 Mar; 44(3):1144-54. PubMed ID: 18662841
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Solution structure of the Grb2 N-terminal SH3 domain complexed with a ten-residue peptide derived from SOS: direct refinement against NOEs, J-couplings and 1H and 13C chemical shifts.
    Wittekind M; Mapelli C; Lee V; Goldfarb V; Friedrichs MS; Meyers CA; Mueller L
    J Mol Biol; 1997 Apr; 267(4):933-52. PubMed ID: 9135122
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.