119 related articles for article (PubMed ID: 20854912)
1. Conformational dynamics of supramolecular protein assemblies.
Kim DN; Nguyen CT; Bathe M
J Struct Biol; 2011 Feb; 173(2):261-70. PubMed ID: 20854912
[TBL] [Abstract][Full Text] [Related]
2. Conformational dynamics data bank: a database for conformational dynamics of proteins and supramolecular protein assemblies.
Kim DN; Altschuler J; Strong C; McGill G; Bathe M
Nucleic Acids Res; 2011 Jan; 39(Database issue):D451-5. PubMed ID: 21051356
[TBL] [Abstract][Full Text] [Related]
3. Folding funnels and conformational transitions via hinge-bending motions.
Kumar S; Ma B; Tsai CJ; Wolfson H; Nussinov R
Cell Biochem Biophys; 1999; 31(2):141-64. PubMed ID: 10593256
[TBL] [Abstract][Full Text] [Related]
4. A dynamic model of long-range conformational adaptations triggered by nucleotide binding in GroEL-GroES.
Skjaerven L; Muga A; Reuter N; Martinez A
Proteins; 2012 Oct; 80(10):2333-46. PubMed ID: 22576372
[TBL] [Abstract][Full Text] [Related]
5. Predicting order of conformational changes during protein conformational transitions using an interpolated elastic network model.
Tekpinar M; Zheng W
Proteins; 2010 Aug; 78(11):2469-81. PubMed ID: 20602461
[TBL] [Abstract][Full Text] [Related]
6. Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism.
de Groot BL; Vriend G; Berendsen HJ
J Mol Biol; 1999 Mar; 286(4):1241-9. PubMed ID: 10047494
[TBL] [Abstract][Full Text] [Related]
7. Markov state models provide insights into dynamic modulation of protein function.
Shukla D; Hernández CX; Weber JK; Pande VS
Acc Chem Res; 2015 Feb; 48(2):414-22. PubMed ID: 25625937
[TBL] [Abstract][Full Text] [Related]
8. Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.
Zheng W; Brooks BR; Thirumalai D
Biophys J; 2007 Oct; 93(7):2289-99. PubMed ID: 17557788
[TBL] [Abstract][Full Text] [Related]
9. High-throughput modeling and analysis of protein structural dynamics.
Liu X; Karimi HA
Brief Bioinform; 2007 Nov; 8(6):432-45. PubMed ID: 17485424
[TBL] [Abstract][Full Text] [Related]
10. A survey of coarse-grained methods for modeling protein conformational transitions.
Zheng W; Wen H
Curr Opin Struct Biol; 2017 Feb; 42():24-30. PubMed ID: 27810573
[TBL] [Abstract][Full Text] [Related]
11. Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps.
Grubisic I; Shokhirev MN; Orzechowski M; Miyashita O; Tama F
J Struct Biol; 2010 Jan; 169(1):95-105. PubMed ID: 19800974
[TBL] [Abstract][Full Text] [Related]
12. Structure and conformational dynamics of scaffolded DNA origami nanoparticles.
Pan K; Bricker WP; Ratanalert S; Bathe M
Nucleic Acids Res; 2017 Jun; 45(11):6284-6298. PubMed ID: 28482032
[TBL] [Abstract][Full Text] [Related]
13. Toward Modular Analysis of Supramolecular Protein Assemblies.
Kim J; Kim JG; Yun G; Lee PS; Kim DN
J Chem Theory Comput; 2015 Sep; 11(9):4260-72. PubMed ID: 26575921
[TBL] [Abstract][Full Text] [Related]
14. Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL.
Chennubhotla C; Yang Z; Bahar I
Mol Biosyst; 2008 Apr; 4(4):287-92. PubMed ID: 18354781
[TBL] [Abstract][Full Text] [Related]
15. A finite element framework for computation of protein normal modes and mechanical response.
Bathe M
Proteins; 2008 Mar; 70(4):1595-609. PubMed ID: 17975833
[TBL] [Abstract][Full Text] [Related]
16. Coarse-grained normal mode analysis in structural biology.
Bahar I; Rader AJ
Curr Opin Struct Biol; 2005 Oct; 15(5):586-92. PubMed ID: 16143512
[TBL] [Abstract][Full Text] [Related]
17. Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle.
Tehver R; Chen J; Thirumalai D
J Mol Biol; 2009 Mar; 387(2):390-406. PubMed ID: 19121324
[TBL] [Abstract][Full Text] [Related]
18. The 13 angstroms structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy.
Falke S; Tama F; Brooks CL; Gogol EP; Fisher MT
J Mol Biol; 2005 Apr; 348(1):219-30. PubMed ID: 15808865
[TBL] [Abstract][Full Text] [Related]
19. Rigid-cluster models of conformational transitions in macromolecular machines and assemblies.
Kim MK; Jernigan RL; Chirikjian GS
Biophys J; 2005 Jul; 89(1):43-55. PubMed ID: 15833998
[TBL] [Abstract][Full Text] [Related]
20. Fluctuations within folded proteins: implications for thermodynamic and allosteric regulation.
DuBay KH; Bowman GR; Geissler PL
Acc Chem Res; 2015 Apr; 48(4):1098-105. PubMed ID: 25688669
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]