359 related articles for article (PubMed ID: 20874411)
1. Reconstructing ancestral genomic sequences by co-evolution: formal definitions, computational issues, and biological examples.
Tuller T; Birin H; Kupiec M; Ruppin E
J Comput Biol; 2010 Sep; 17(9):1327-44. PubMed ID: 20874411
[TBL] [Abstract][Full Text] [Related]
2. Reconstruction of ancestral genomic sequences using likelihood.
Elias I; Tuller T
J Comput Biol; 2007 Mar; 14(2):216-37. PubMed ID: 17456016
[TBL] [Abstract][Full Text] [Related]
3. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
4. Approximate maximum parsimony and ancestral maximum likelihood.
Alon N; Chor B; Pardi F; Rapoport A
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(1):183-7. PubMed ID: 20150680
[TBL] [Abstract][Full Text] [Related]
5. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.
Luhmann N; Lafond M; Thevenin A; Ouangraoua A; Wittler R; Chauve C
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1364-1373. PubMed ID: 28166504
[TBL] [Abstract][Full Text] [Related]
6. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
7. Reconstructing ancestral gene content by coevolution.
Tuller T; Birin H; Gophna U; Kupiec M; Ruppin E
Genome Res; 2010 Jan; 20(1):122-32. PubMed ID: 19948819
[TBL] [Abstract][Full Text] [Related]
8. Ancestral maximum likelihood of evolutionary trees is hard.
Addario-Berry L; Chor B; Hallett M; Lagergren J; Panconesi A; Wareham T
J Bioinform Comput Biol; 2004 Jun; 2(2):257-71. PubMed ID: 15297981
[TBL] [Abstract][Full Text] [Related]
9. A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference.
Gao N; Zhang Y; Feng B; Tang J
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(6):1248-54. PubMed ID: 26671797
[TBL] [Abstract][Full Text] [Related]
10. Maximum likelihood of evolutionary trees: hardness and approximation.
Chor B; Tuller T
Bioinformatics; 2005 Jun; 21 Suppl 1():i97-106. PubMed ID: 15961504
[TBL] [Abstract][Full Text] [Related]
11. Vestige: maximum likelihood phylogenetic footprinting.
Wakefield MJ; Maxwell P; Huttley GA
BMC Bioinformatics; 2005 May; 6():130. PubMed ID: 15921531
[TBL] [Abstract][Full Text] [Related]
12. Ancestral animal genomes reconstruction.
Rascol VL; Pontarotti P; Levasseur A
Curr Opin Immunol; 2007 Oct; 19(5):542-6. PubMed ID: 17702562
[TBL] [Abstract][Full Text] [Related]
13. Fast ancestral gene order reconstruction of genomes with unequal gene content.
Feijão P; Araujo E
BMC Bioinformatics; 2016 Nov; 17(Suppl 14):413. PubMed ID: 28185578
[TBL] [Abstract][Full Text] [Related]
14. Evolutionary triplet models of structured RNA.
Bradley RK; Holmes I
PLoS Comput Biol; 2009 Aug; 5(8):e1000483. PubMed ID: 19714212
[TBL] [Abstract][Full Text] [Related]
15. On the inference of parsimonious indel evolutionary scenarios.
Chindelevitch L; Li Z; Blais E; Blanchette M
J Bioinform Comput Biol; 2006 Jun; 4(3):721-44. PubMed ID: 16960972
[TBL] [Abstract][Full Text] [Related]
16. A practical algorithm for estimation of the maximum likelihood ancestral reconstruction error.
Hickey G; Blanchette M
Pac Symp Biocomput; 2010; ():31-42. PubMed ID: 19908355
[TBL] [Abstract][Full Text] [Related]
17. [Rearrangement and inference of chromosome structures].
Gorbunov KY; Gershgorin RA; Lyubetsky VA
Mol Biol (Mosk); 2015; 49(3):372-83. PubMed ID: 26107890
[TBL] [Abstract][Full Text] [Related]
18. Reconstruction of ancestral gene orders using intermediate genomes.
Feijão P
BMC Bioinformatics; 2015; 16 Suppl 14(Suppl 14):S3. PubMed ID: 26451811
[TBL] [Abstract][Full Text] [Related]
19. Reconstruction of ancestral protein sequences and its applications.
Cai W; Pei J; Grishin NV
BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393
[TBL] [Abstract][Full Text] [Related]
20. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
Bastien O; Ortet P; Roy S; Maréchal E
BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
