These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

282 related articles for article (PubMed ID: 20923983)

  • 1. Inference of homologous recombination in bacteria using whole-genome sequences.
    Didelot X; Lawson D; Darling A; Falush D
    Genetics; 2010 Dec; 186(4):1435-49. PubMed ID: 20923983
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Inference of the properties of the recombination process from whole bacterial genomes.
    Ansari MA; Didelot X
    Genetics; 2014 Jan; 196(1):253-65. PubMed ID: 24172133
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Bacterial Sequential Markov Coalescent.
    De Maio N; Wilson DJ
    Genetics; 2017 May; 206(1):333-343. PubMed ID: 28258183
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ClonalFrameML: efficient inference of recombination in whole bacterial genomes.
    Didelot X; Wilson DJ
    PLoS Comput Biol; 2015 Feb; 11(2):e1004041. PubMed ID: 25675341
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Inferring Ancestral Recombination Graphs from Bacterial Genomic Data.
    Vaughan TG; Welch D; Drummond AJ; Biggs PJ; George T; French NP
    Genetics; 2017 Feb; 205(2):857-870. PubMed ID: 28007885
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome-wide inference of ancestral recombination graphs.
    Rasmussen MD; Hubisz MJ; Gronau I; Siepel A
    PLoS Genet; 2014; 10(5):e1004342. PubMed ID: 24831947
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient inference of recombination hot regions in bacterial genomes.
    Yahara K; Didelot X; Ansari MA; Sheppard SK; Falush D
    Mol Biol Evol; 2014 Jun; 31(6):1593-605. PubMed ID: 24586045
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RecGraph: recombination-aware alignment of sequences to variation graphs.
    Avila Cartes J; Bonizzoni P; Ciccolella S; Della Vedova G; Denti L; Didelot X; Monti DC; Pirola Y
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38676570
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination.
    Pang TY
    BMC Evol Biol; 2020 May; 20(1):52. PubMed ID: 32381044
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bayesian inference of ancestral recombination graphs.
    Mahmoudi A; Koskela J; Kelleher J; Chan YB; Balding D
    PLoS Comput Biol; 2022 Mar; 18(3):e1009960. PubMed ID: 35263345
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SimBac: simulation of whole bacterial genomes with homologous recombination.
    Brown T; Didelot X; Wilson DJ; Maio N
    Microb Genom; 2016 Jan; 2(1):. PubMed ID: 27713837
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Detection of recombination events in bacterial genomes from large population samples.
    Marttinen P; Hanage WP; Croucher NJ; Connor TR; Harris SR; Bentley SD; Corander J
    Nucleic Acids Res; 2012 Jan; 40(1):e6. PubMed ID: 22064866
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
    Treangen TJ; Ondov BD; Koren S; Phillippy AM
    Genome Biol; 2014; 15(11):524. PubMed ID: 25410596
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bayesian population genomic inference of crossing over and gene conversion.
    Padhukasahasram B; Rannala B
    Genetics; 2011 Oct; 189(2):607-19. PubMed ID: 21840857
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.
    Mostowy R; Croucher NJ; Andam CP; Corander J; Hanage WP; Marttinen P
    Mol Biol Evol; 2017 May; 34(5):1167-1182. PubMed ID: 28199698
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences.
    Yang T; Deng HW; Niu T
    BMC Bioinformatics; 2014 Jan; 15():3. PubMed ID: 24387001
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detection of homologous recombination events in bacterial genomes.
    Wang WB; Jiang T; Gardner S
    PLoS One; 2013; 8(10):e75230. PubMed ID: 24116030
    [TBL] [Abstract][Full Text] [Related]  

  • 18. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.
    Darling AE; Mau B; Perna NT
    PLoS One; 2010 Jun; 5(6):e11147. PubMed ID: 20593022
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
    Chaguza C; Tonkin-Hill G; Lo SW; Hadfield J; Croucher NJ; Harris SR; Bentley SD
    Bioinformatics; 2022 Feb; 38(5):1450-1451. PubMed ID: 34864895
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reliable and Fast Estimation of Recombination Rates by Convergence Diagnosis and Parallel Markov Chain Monte Carlo.
    Guo J; Jain R; Yang P; Fan R; Kwoh CK; Zheng J
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):63-72. PubMed ID: 26355508
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.